Sol Genomics Network

Unigene SGN-U268228

Unigene Basic Information

Unigene ID:	SGN-U268228
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268228
mRNA sequence:	Length: 1575 bp

>SGN-U268228 Solanum tuberosum #4 (167 members)
GATCCCCGGGCTGCAGAATCGGCGAACCAAAAATACAAAGAGGTTTCTTCTCTCAAGGGGTAAAAAGATTGCTCCTTTCAGACATTTCTA
AACCTCTTTTTCTATTAGTTCGCTGTTGGGTTCCTCACTTGCCTTTTTCTTGAGAATGGAAACTTTCCTATTCACCTCCGAGTCTGTGAA
CGAGGGTCACCCAGACAAGCTCTGTGATCAGATCTCTGATGCAGTTCTTGACGCCTGCCTTGAGCAAGATCCTGAGAGCAAAGTTGCATG
TGAAACTTGCACCAAGACCAACTTGGTCATGGTCTTTGGTGAGATCACGACCAAGGCTATTGTAGACTATGAGAAGATTGTGCGTGACAC
ATGCCGTAATATTGGATTTGTTTCTGATGATGTTGGTCTTGATGCTGATAACTGCAAGGTCCTTGTTTACATTGAGCAGCAAAGTCCTGA
TATTGCTCAAGGTGTCCACGGCCATCTGACCAAACGCCCCGAGGAGATTGGTGCTGGTGACCAGGGTCACATGTTTGGCTATGCCACCGA
TGAGACCCCTGAATTAATGCCTCTCAGTCACGTGCTTGCAACTAAACTTGGTGCCCGTCTTACAGAAGTCCGCAAGAATGGCACCTGCCC
CTGGTTGAGGCCTGATGGCAAAACTCAAGTTACTGTTGAGTATTGCAATGACAATGGTGCCATGATTCCAATTAAGGTACACACTGTTCT
TATCTCCACCCAACACGATGAGACCGTTACAAATGATGAGATTGCCCGCGACCTTAAGGAGCATGTCATCAAGCCAGTCATCCCAGAGAA
GTACCTTGACGAGAAGACAATCTTCCACCTTAACCCATCTGGCCGATTTGTTATTGGTGGACCTCATGGTGATGCTGGTCTCACTGGTCG
TAAAATCATCATCGACACATATGGTGGTTGGGGTGCTCATGGTGGTGGTGCTTTCTCGGGCAAGGACCCAACCAAGGTTGACAGGAGTGG
TGCATACATCGTAAGGCAAGCTGCAAAGAGTATTGTAGCTAGTGGACTCGCTCGCAGATGCATCGTGCAGGTTTCTTATGCCATCGGTGT
GCCTGAGCCATTGTCTGTATTTGTTGACACCTATGGCACTGGAAAGATCCCCGACAAGGAAATTTTGAAGATCGTTAAGGAGAACTTCGA
CTTCAGACCTGGAATGATGTCCATTAACTTGGATTTGAAGAGGGGTGGCAATGGAAGATTCTTGAAAACTGCTGCCTATGGTCACTTTGG
ACGTGATGACCCCGATTTCACATGGGAAGTTGTCAAGCCCCTCAAGTGGGAAAAGCCCCAAGACTAATAAGTGTCTGAAAGTGCTTGCCT
ATGTTTTTTGTTCTTTGTCGTTTTTGCTTGTCGTTGTATTTTCTCTTTTGAACCTTTATTTTGTTATTGTCCTGTTTCCATTGTGTTGGA
TATCTTAGGCCTTGGAATGTTAAGGAAAAAAAAACTATTATATTATATACATAAAAATTAGTGCATTTGTGGAATGATGTTCTTATGAAA
ATATATTGAAAAATGATGAGTGCAAATGAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
DQ235185	DQ235185 S-adenosyl methionine synthase	S-adenosyl methionine synthase
DQ235184	DQ23184 S-adenosyl methionine synthase

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	25
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STM	mixed tissues	14805	8
Solanum tuberosum	STOL	Stolon	6462	19
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	TBSK	Tuber Skin	4812	7
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	16
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	12
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	12
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	3
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	8
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	6
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	41

mRNA member sequences (167)

Alignment image suppressed for unigene with 167 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	216	S-AdoMet_synt	69
2	22153	S-AdoMet_synt	53
5	56384	S-AdoMet_synt	53
1.1	101580	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	69
2	118574	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	50
5	129058	S-adenosylmethionine synthetase - Molecular Function: methionine adenosyltransferase activity (GO:0004478) - Molecular Function: ATP binding (GO:0005524) - Biological Process: one-carbon compound metabolism (GO:0006730)	50

Preceding Unigenes (2)

Unigene	Build
SGN-U243235	Solanum tuberosum #3
SGN-U243236	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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