Sol Genomics Network

Unigene SGN-U268209

Unigene Basic Information

Unigene ID:	SGN-U268209
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268209
mRNA sequence:	Length: 1598 bp

>SGN-U268209 Solanum tuberosum #4 (31 members)
GAAGAGAAAAGCCTCTCAGATCTCATCTCAAACCCTTTCATTTCTCTTATACTCGCCTTACCCATGGCTCTACTCGTTGAGAAGACCACC
TCTGGCCGCGAGTACAAGGTGAAGGACATGTCCCAGGCTGACTTCGGCAGGCTCGAAATCGAGCTTGCCGAAGTTGAAATGCGTGGTCTC
ATGGCTTCCCGTACTGAATTTGGCCCTTCACAGCCCTTCAAAGGTGCAAAGATCACTGGATCTCTGCTGTTTTTGCCTGGAAAGGTGAGA
CTTTGCAGGAGTACTGGTGGTGTACTGAGAGGGCACTTGATTGGGGTCCAGGTGGTGGTCCTGATCTGATTGTTGATGATGGAGGTGATG
CTACACTCTTGATTCATGAGGGTGTTAAGGCAGAGGAGGAGTTTGCTAAGAATGGGACAATCCCAGATCCTACTTCTACTGATAATGTTG
AGTTTCAACTTGTGCTTACTATTATTAAGGAGAGCTTAAAGACTGATCCTTTAAGGTACACTAAGATGAAGGAGAGACTTGTTGGTGTTT
CTGAGGAAACTACCACTGGTGTTAAGAGGCTTTACCAAATGCAGGCTAATGGAACTTTGCTTTTCCCTGCTATTAATGTTAATGACTCTG
TTACCAAGAGCAAGTTTGACAACTTGTATGGATGCCGCCACTCACTTCCCGATGGTCTCATGAGGGCTACTGATGTTATGATTGCTGGAA
AGGTTGCCCTTGTTGCTGGTTATGGAGATGTCGGCAAGGGATGTGCTGCTACCATGGAAGGCCTCCAGGTTCTTCCTCTTGAGGATGTTG
TTTCTGAGGTTGATATCTTTGTGACCACCACTGGTAACAAGGACATCATCATGGTTGACCACATGAGGAAGATGAAGAACAATGCCATTG
TCTGCAACATTGGTCACTTTGACAATGAAATCGACATGCATGGTCTTGAGACCTTCCCTGGTGTGAAGAGGATCACAATCAAGCCACAAA
CCGACAGATGGGTCTTCCCAGACACCAAGAGTGGCATCATTGTCTTGGCCGAGGGTCGTCTCATGAACTTGGGATGTGCCACTGGACACC
CCAGTTTTGTGATGTCTTGCTCTTTCACTAACCAAGTCATTGCCCAACTCGAGTTGTGGAATGAGAGAACCAGTGGTAAATACGAGAAGA
AGGTGTACGTCTTGCCAAAGCACCTTGACGAGAAGGTTGCTGCCTTGCATCTTGGAAAGCTCGGAGCTAAGCTTACCAAACTCACCAAGG
ATCAAGCTGACTATATTAGCGTACCAGTTGAGGGTCCTTACAAGCCTGCTCACTACAGGTACTGAGGGCAAGAGACACTCACAGTGGAAC
AACGATATCGCGGCATGATTGTTTTGTTTTTAATACTTTGATTTTGTTTAGGTAGTGTGTTTTTATTATTGTTGGGGGGAAGTTGGCATG
TTTTGCTGGAAAGTTTACCTAAATGTGTTTGAATAATATTTGAATTATGGTTGGGGTGGTGTCATATGATGATATTGTACTAAGTTAGAT
TCATTTGCTTTTATTTTTTCTATAAAATTTGCTTCAAGGAAACAAAGAATCATGTTTTCCATTTTTCA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ252503	S-adenosyl-L-homocysteine hydrolase	hydrolase

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	STM	mixed tissues	14805	11
Solanum tuberosum	TUBS	Tubers	5976	3
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	5

mRNA member sequences (31)

Alignment image suppressed for unigene with 31 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	694	Ado_hcyase Porphobil_deam 2-Hacid_DH_C TrkA_N THF_Dhg_Cyh	27
2	22494	Ado_hcyase Porphobil_deam 2-Hacid_DH_C TrkA_N THF_Dhg_Cyh	27
5	56700	Ado_hcyase Porphobil_deam 2-Hacid_DH_C TrkA_N THF_Dhg_Cyh	25
1.1	101772	S-adenosyl-L-homocysteine hydrolase - Molecular Function: adenosylhomocysteinase activity (GO:0004013) - Biological Process: one-carbon compound metabolism (GO:0006730) Small hydrophilic plant seed protein	39
2	118850	S-adenosyl-L-homocysteine hydrolase - Molecular Function: adenosylhomocysteinase activity (GO:0004013) - Biological Process: one-carbon compound metabolism (GO:0006730)	28
5	129268	S-adenosyl-L-homocysteine hydrolase - Molecular Function: adenosylhomocysteinase activity (GO:0004013) - Biological Process: one-carbon compound metabolism (GO:0006730)	28

Preceding Unigenes (3)

Unigene	Build
SGN-U243240	Solanum tuberosum #3
SGN-U243241	Solanum tuberosum #3
SGN-U259013	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: