Sol Genomics Network

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Unigene SGN-U268109

Unigene Basic Information

Unigene ID:	SGN-U268109
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268109
mRNA sequence:	Length: 2856 bp

>SGN-U268109 Solanum tuberosum #4 (185 members)
CATCATCTCTTTTTATACTTTTAATTTTTTCTCTAATTCATCATCATGATTGGTCAAATTACGAGCGGACTATTTGGTGGCCATGATGAC
TCAAAGAAAGTTAAAGGAACTGTGGTGATGATGAACAAAAATGTTCTAGATTTTACTGATCTTGCTGGTTCTTTGACTGGAAAAATCTTT
GACGTCCTTGGCCAAAAGGTTTCTTTTCAATTAATTAGTTCTGTGCAAGGTGATCCTACAAATGGTTTACAAGGGAAGCACAGCAATCCA
GCCTACTTGGAGAACTCTCTCTTTACTCTAACACCATTAACAGCAGGTAGTGAAACAGCCTTTGGTGTCACATTTGACTGGAATGAGGAG
TTTGGAGTTCCAGGTGCATTTATCATCAAAAATATGCATATCAATGAGTTCTTTCTCAAGTCACTCACACTTGAAGATGTGCCTAATCAT
GGCAAGGTCCATTTTGTTTGCAATTCTTGGGTTTATCCTTCTTTGAATTACAAGTCAGATCGCATTTTCTTTGCAAATCAGCCATATCTC
CCAAGTGAAACACCAGAGCTTTTGCGAAAATACAGAGAAAATGAATTGCTAACATTAAGAGGAGATGGAACTGGAAAGCGCGAGGCGTGG
GATAGGATTTATGACTATGATATCTACAATGACTTGGGTAATCCTGATCAAGGTAAAGAAAATGTTAGAACTACCTTAGGAGGTTCTGCT
GAGTACCCGTATCCTCGGAGAGGAAGAACTGGTAGACCACCAACACGAACAGATCCTAAAAGTGAAAGCAGGATTCCTCTTATTCTGAGC
TTAGACATCTATGTACCGAGAGACGAGCGTTTTGGTCACTTGAAGATGTCAGACTTCCTAACATATGCTTTGAAATCCATTGTTCAATTC
ATCCTCCCTGAATTACATGCCCTGTTTGATGGTACCCCTAACGAGTTCGATAGTTTTGAGGATGTACTTAGACTATATGAAGGAGGGATC
AAACTTCCTCAAGGACCTTTATTTAAGGCTCTCACTGCTGCTATACCTCTGGAGATGATAAGAGAACTCCTTCGAACAGACGGTGAAGGA
ATATTGAGATTTCCAACTCCTCTAGTGATTAAAGATAGTAAAACCGCATGGAGGACTGATGAAGAATTCGCAAGAGAAATGCTAGCTGGA
GTTAATCCTATCATAATTAGTAGACTTCAAGAATTTCCTCCAAAAAGCAAGCTAGATCCCGAAGCATATGGAAATCAAAACAGTACAATT
ACTGCAGAACACATAGAGGATAAGCTGGATGGACTAACGGTTGATGAGGCGATGAACAATAATAAACTTTTCATATTGAACCATCATGAT
GTTCTTATACCATATTTGAGGAGGATAAACACTACAATAACGAAAACATATGCCTCGAGAACTTTGCTCTTCTTGCAAGATAATGGATCT
TTGAAGCCACTAGCAATTGAATTGAGTTTGCCACATCCAGATGGAGATCAATTTGGTGTTACTAGCAAAGTGTATACTCCAAGTGATCAA
GGTGTTGAGAGCTCTATCTGGCAATTGGCCAAAGCTTATGTTGCGGTGAATGACTCTGGTGTTCATCAACTAATTAGTCATTGGTTGAAT
ACACATGCAGTGATCGAGCCATTTGTGATTGCAACAAACAGGCAACTAAGTGTGCTTCACCCTATTCATAAGCTTCTATATCCTCATTTC
CGGGACACAATGAATATTAATGCTTCGGCAAGACAAATCCTAATCAATGCTGGTGGAGTTCTTGAGAGTACAGTTTTTCAATCCAAATTT
GCCATGGAAATGTCAGCTGTCGTTTACAAAGATTGGGTTTTCCCTGATCAAGCCCTTCCGGCTGATCTTGTTAAGAGGGGAGTAGCAGTT
GAGGACTCGAGTTCTCCTCATGGTGTTCGTTTACTGATAGAGGACTATCCATACGCTGTTGATGGCTTAGAAATATGGTCTGCAATCAAA
AGTTGGGTGACAGACTACTGCAGTTTCTACTATGGATCGGATGAAGAGATTCTGAAAGACAATGAACTACAAGCCTGGTGGAAGGAACTC
CGAGAAGTGGGACATGGTGACAAGAAAAATGAACCATGGTGGCCTGAAATGAAAACACCACAAGAGTTAATCGATTCGTGTACCACCATC
ATATGGATAGCTTCTGCACTTCATGCAGCAGTTAATTTCGGGCAATATCCTTATGCAGGTTATCTCCCAAATCGCCCCACAGTAAGTCGA
AGATTCATGCCTGAACCAGGAACTCCTGAATATGAAGAGCTAAAGAGAAACCCCGATAAGGCATTCTTGAAAACAATCACAGCTCAGTTA
CAAACATTGCTTGGTGTTTCCCTCGTAGAGATATTGTCAAGGCATACTACAGATGAGATTTACCTCGGACAACGAGAGTCTCCTGAATGG
ACAAAGGACAAAGAACCACTTGCTGCTTTCGACAGATTTGGAAAGAAGTTGACAGACATTGAAAAACAGATTATACAGAGGAATGGTGAC
AACATATTGACAAACAGATCAGGCCCCGTTAACGCTCCGTATACGTTGCTTTTCCCAACAAGTGAAGGTGGACTTACAGGCAAAGGAATT
CCCAACAGTGTGTCAATATAGAAAGAAGGAAAATGAAGAAAGCTGGAGTTTGAAATAAATCTTCATTACTATGTTAAGTGTGATCTCTTT
CATTTCTGTATGTTTGATTCTCCTAAGTTTACTGTATTTTCATTTCAACGTTACTTGTTATGTATTTCTGAGTATGTTGTGAGAATAATA
AAACTAATTCCAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
lox1	lipoxygenase 1	lipoxygenase

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	8
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	54
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	7
Solanum tuberosum	TBSK	Tuber Skin	4812	40
Solanum tuberosum	TUBS	Tubers	5976	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	4
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	3
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	12
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	27
Solanum tuberosum	vSTmRNA		708	16

mRNA member sequences (185)

Alignment image suppressed for unigene with 185 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P71315 (861 Aa)

MIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGKHSNPAYLENSLFTLTPLTA
GSETAFGVTFDWNEEFGVPGAFIIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYRENE
LLTLRGDGTGKREAWDRIYDYDIYNDLGNPDQGKENVRTTLGGSAEYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFGHLK
MSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTAAIPLEMIRELLRTDGEGILRFPTPLVIKDSKT
AWRTDEEFAREMLAGVNPIIISRLQEFPPKSKLDPEAYGNQNSTITAEHIEDKLDGLTVDEAMNNNKLFILNHHDVLIPYLRRINTTITK
TYASRTLLFLQDNGSLKPLAIELSLPHPDGDQFGVTSKVYTPSDQGVESSIWQLAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIATNRQ
LSVLHPIHKLLYPHFRDTMNINASARQILINAGGVLESTVFQSKFAMEMSAVVYKDWVFPDQALPADLVKRGVAVEDSSSPHGVRLLIED
YPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMKTPQELIDSCTTIIWIASALHAAVNFGQ
YPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGK
KLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI

SignalP predicts non-secretion with a score of 0.042

IPR001246 Plant lipoxygenase
IPR000907 Lipoxygenase
IPR001024 Lipoxygenase, LH2

Prediction based on longest six frame method

>SGN-P209941 (864 Aa)

FIIMIGQITSGLFGGHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGKHSNPAYLENSLFTLTP
LTAGSETAFGVTFDWNEEFGVPGAFIIKNMHINEFFLKSLTLEDVPNHGKVHFVCNSWVYPSLNYKSDRIFFANQPYLPSETPELLRKYR
ENELLTLRGDGTGKREAWDRIYDYDIYNDLGNPDQGKENVRTTLGGSAEYPYPRRGRTGRPPTRTDPKSESRIPLILSLDIYVPRDERFG
HLKMSDFLTYALKSIVQFILPELHALFDGTPNEFDSFEDVLRLYEGGIKLPQGPLFKALTAAIPLEMIRELLRTDGEGILRFPTPLVIKD
SKTAWRTDEEFAREMLAGVNPIIISRLQEFPPKSKLDPEAYGNQNSTITAEHIEDKLDGLTVDEAMNNNKLFILNHHDVLIPYLRRINTT
ITKTYASRTLLFLQDNGSLKPLAIELSLPHPDGDQFGVTSKVYTPSDQGVESSIWQLAKAYVAVNDSGVHQLISHWLNTHAVIEPFVIAT
NRQLSVLHPIHKLLYPHFRDTMNINASARQILINAGGVLESTVFQSKFAMEMSAVVYKDWVFPDQALPADLVKRGVAVEDSSSPHGVRLL
IEDYPYAVDGLEIWSAIKSWVTDYCSFYYGSDEEILKDNELQAWWKELREVGHGDKKNEPWWPEMKTPQELIDSCTTIIWIASALHAAVN
FGQYPYAGYLPNRPTVSRRFMPEPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDR
FGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI

SignalP predicts non-secretion with a score of 0.195

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	22092	Plant_lipoxygnse Lipoxygenase Lipoxygenase_LH2	71
5	56340	Plant_lipoxygnse Lipoxygenase Lipoxygenase_LH2	69
1.1	101576	Lipoxygenase LH2 Lipase/lipooxygenase PLAT/LH2 Lipoxygenase - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: lipoxygenase activity (GO:0016165) Plant lipoxygenase - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: lipoxygenase activity (GO:0016165)	70
2	118518	Lipase/lipooxygenase PLAT/LH2 Plant lipoxygenase - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: lipoxygenase activity (GO:0016165) Lipoxygenase - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: lipoxygenase activity (GO:0016165) Lipoxygenase LH2	69
5	129021	Lipase/lipooxygenase PLAT/LH2 Plant lipoxygenase - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: lipoxygenase activity (GO:0016165) Lipoxygenase - Molecular Function: iron ion binding (GO:0005506) - Biological Process: electron transport (GO:0006118) - Molecular Function: lipoxygenase activity (GO:0016165) Lipoxygenase LH2	61

Preceding Unigenes (3)

Unigene	Build
SGN-U243311	Solanum tuberosum #3
SGN-U243313	Solanum tuberosum #3
SGN-U259052	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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