Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Unigene SGN-U268097

Unigene Basic Information

Unigene ID:	SGN-U268097
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268097
mRNA sequence:	Length: 2136 bp

>SGN-U268097 Solanum tuberosum #4 (44 members)
CAATAATGGCAAGCTTGTGCAATAGTAGTAGTACATCTCTCAAAACTCCTTTTACTTCTTCCTCCACTTCTTTATCTTCCACTCCTAAGC
CCTCTCAACTTTTCATCCATGGAAAACGTAACCAAATGTTCAAAGTTTCATGCAAGGTTACCAATAATAACGGTGACCAAAACGTTGAAA
CGAATTCTGTTGATCGAAGAAATGTTCTTCTTGGCTTAGGTGGTCTTTATGGTGTTGCTAATGCTATACCATTAGCTGCATCCGCTGCTC
CAACTCCACCTCCTGATCTCTCGTCTTGTAGTATAGCCAGGATTAACGAAAATCAGGTGGTGCCGTACAGTTGTTGCGCGCCTAAGCCTG
ATGATATGGAGAAAGTTCCGTATTACAAGTTCCCTTCTATGACTAAGCTCCGTGTTCGTCAGCCTGCTCATGAAGCTAATGAGGAGTATA
TTGCCAAGTACAATCTGGCGATTAGTCGAATGAGAGATCTTGATAAGACACAACCTTTAAACCCTATTGGTTTTAAGCAACAAGCTAATA
TACATTGTGCTTATTGTAATGGTGCTTATAGAATTGGTGGCAAAGAGTTACAAGTTCATAATTCTTGGCTTTTCTTCCCGTTCCATAGAT
GGTACTTGTACTTCCACGAGAGAATCGTGGGAAAATTCATTGATGATCCAACTTTCGCTTTGCCATATTGGAATTGGGACCATCCAAAGG
GTATGCGTTTTCCTGCCATGTATGATCGTGAAGGGACTTCCCTTTTCGATGTAACACGTGACCAAAGTCACCGAAATGGAGCAGTAATCG
ATCTTGGTTTTTTCGGCAATGAAGTCGAAACAACTCAACTCCAGTTGATGAGCAATAATTTAACACTAATGTACCGTCAAATGGTAACTA
ATGCTCCATGTCCTCGGATGTTCTTTGGCGGGCCTTATGATCTCGGGGTTAACACTGAACTCCCGGGAACTATAGAAAACATCCCTCACG
GTCCTGTCCACATCTGGTCTGGTACAGTGAGAGGTTCAACTTTGCCCAATGGTGCAATATCAAACGGTGAGAATATGGGTCATTTTTACT
CAGCTGGTTTGGACCCGGTTTTCTTTTGCCATCACAGCAATGTGGATCGGATGTGGAGCGAATGGAAAGCGACAGGAGGGAAAAGAACGG
ATATCACACATAAAGATTGGTTGAACTCCGAGTTCTTTTTCTATGATGAAAATGAAAACCCTTACCGTGTGAAAGTCAGAGACTGTTTGG
ACACGAAGAAGATGGGATACGATTACAAACCAATTGCCACACCATGGCGTAACTTCAAGCCCTTAACAAAGGCTTCAGCTGGAAAAGTGA
ATACAGCTTCACTTCCGCCAGCTAGCAATGTATTCCCATTGGCTAAACTCGACAAAGCAATTTCGTTTTCCATCAATAGGCCGACTTCGT
CAAGGACTCAACAAGAGAAAAATGCACAAGAGGAGATGTTGACATTCAGTAGCATAAGATATGATAACAGAGGGTACATAAGGTTCGATG
TGTTTTTGAACGTGGACAATAATGTGAATGCGAATGAGCTTGACAAGGCGGAGTTTGCGGGGAGTTATACTAGTTTGCCACATGTTCATA
GAGCTGGTGAGACTAATCATATCGCGACTGTTGATTTCCAGCTGGCGATAACGGAACTGTTGGAGGATATTGGTTTGGAAGATGAAGATA
CTATTGCGGTGACTCTGGTGCCAAAGAGAGGTGGTGAAGGTATCTCCATTGAAAGTGCGACGATCAGTCTTGCGGATTGTTAATTAGTCT
CTATTGAATCTGCTGAGATTACACTTTGATGGATGATGCTCTGTTTTTATTTTCTTGTTCTGTTTTTTCCTCATGTTGAAATCAGCTTTG
ATGCTTGATTTCATTGAAGTTGTTATTCAAGAATAAATCAGTTGCAATTATGTTTGAAAAGTAAAACAAGTTTAAACATACTATCCTTCT
GGTCTAATTTATTGAAAATAGTTCAAAAATACTATCCTTCCGGTCTAAAAATGTCCTACTCCTTTGTTTTTGGTTCAAAAATACCTCTTA
TTCCATCTTTTGGTCTAAAAGTACTCTCAAACCAAATTTAAATAAATTGAATACTTTTACTAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
ppo1	polyphenol oxidase 1	polyphenol oxidase\|polyphenol oxidase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	6
Solanum tuberosum	STOL	Stolon	6462	2
Solanum tuberosum	SWST	Stolon	5942	4
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	6
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	8
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	13
Solanum tuberosum	vSTmRNA		708	2

mRNA member sequences (44)

Alignment image suppressed for unigene with 44 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	245	Ribosomal_S15	63
2	22273		38
5	56477		38
1.1	101607	Ribosomal protein S15 - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) S15/NS1 RNA-binding Ribosomal S13S15 N-terminal - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	61
2	118702		35
5	129174		34

Preceding Unigenes (1)

Unigene	Build
SGN-U243303	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: