Sol Genomics Network

clone(s) in cart (order)

Old browser version detected

This site is optimized for modern web browsers

Please upgrade your browser

Sorry!, some features may not work in outdated browsers

Sol Genomics Network

Search
- Organisms
- Loci & Genes
- Genome features
- Accessions and Plots
- Traits
- QTLs
- Markers
- BACs
- Unigenes
- ESTs and libraries
- Gene Families
- Insitu database
- Images
- People
- FAQ
Maps
- All Maps
- Comparative Viewer
- Submit a map
- Tomato
- Tomato-EXPEN 2000
- Tomato-Kazusa/SolCAP
- Tomato QTLs
- Tomato physical map
- Tomato FPC contig map
- Tomato IL map
- Tomato FISH map
- Tomato AGP map
- Pepper
- Pepper COSII map
- Pepper-AC99
- Pepper-FA03
- Eggplant
- Eggplant COSII map
- Eggplant-LXM 2002
- More Maps
- Potato-TXB 1992
- Tobacco SSR 2007
- Arabidopsis COSII
Genomes
- Sequenced Accessions
- Completed Genomes
- Tomato
- Potato
- Pepper
- Eggplant
- Solanum pennellii
- Solanum lycopersicoides
- Solanum pimpinellifolium
- Solanum lycopersicum var. cerasiforme
- Iochroma cyaneum
- Draft Genomes
- Nicotiana attenuata
- Nicotiana benthamiana
- Nicotiana tabacum
- Petunia axillaris
- Petunia inflata
- Solanum chilense
- Coffea humblotiana
- Resequencing projects
- Solanum lycopersicum inbreds
- 150 Tomato Genome Resequencing Project
- BGI Tomato 360 genomes
- Varitome Project
Projects
Tools
- Sequence Analysis
- BLAST
- VIGS Tool
- Alignment Analyzer
- Tree Browser
- Motif Finder
- Mapping
- Genome Browser (Jbrowse 1)
- SolBrowse Comparative genome viewer
- Jbrowse2 (under development)
- Comparative Map Viewer
- CAPS Designer
- solQTL: QTL Mapping
- Molecular Biology
- In Silico PCR
- Tomato Expression Atlas (TEA)
- Tomato Expression Database (TED)
- Systems Biology
- CRISPget CRISPR designer
- Coffee Interactomic Data
- SGN Ontology Browser
- Breeder Tools
- Breeders Toolbox
- Bulk Query
- FTP Site
- Download Genome Sequences
- Download Gene Sequences
- Clones, Arrays, Unigenes and BACs
- Unigene Converter
About
- About
- Contact
- Cite SGN
- Links
- Help
- FAQ
- Become SGN Editor
- Forum
- FTP data
- SlideShare
- Twitter
- Facebook

This site uses cookies to provide logins and other features. Please accept the use of cookies by clicking Accept.

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U587276 in the current build, Tomato 200607 #2

Unigene SGN-U232754

Unigene Basic Information

Unigene ID:	SGN-U232754
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	232754
mRNA sequence:	Length: 212 bp

>SGN-U232754 Lycopersicon Combined #3 (1 members)
TTAAAATCTCGAAATCTTTCCCTACCAACCACACCCACCGTAGGCTACGTATCAATGCTTCGAAGTCCAGCCCAAGAGTCACCGGCAGAA
ACCTTCGCGTTGCGGTGATTGGTGGTGGTCCTGCTGGTGGCGCCGCTGCAAACACTCTCGCTAAGGGTGGAATTGAAACGTTTTGGATAA
AACGCATGATGGACGACTGCAAATCCTGCGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E390573
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

TOM1 data for Unigene: SGN-U232754

SGN-C	SGN-E	Dir.	Chip	SpotID	Order	Info
SGN-C184353	SGN-E390573	Unknown	TOM1	1-1-2.1.16.11TUS44I23	Order Array	TMD

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|3821254\|emb\|CAA07683.1\|	74.71	4.6e-13	81.16	207 bp (97.6%)	3
Description:	gi\|3821254\|emb\|CAA07683.1\| geranylgeranyl reductase [Nicotiana tabacum]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (1)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P26915 (70 Aa)

KISKSFPTNHTHRRLRINASKSSPRVTGRNLRVAVIGGGPAGGAAANTLAKGGIETFWIKRMMDTANPAX

SignalP predicts non-secretion with a score of 0.051

IPR000205 NAD-binding site

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1822	GidA_sub Thi4 FAD_pyr_redox NAD_BS Flav_monooxygnse Thioredox_reduct TrkA_N Rng_mnoxygenase Moxy_FAD_binding Gid	10
2	23867	GidA_sub Thi4 FAD_pyr_redox NAD_BS Flav_monooxygnse Thioredox_reduct TrkA_N Rng_mnoxygenase Moxy_FAD_binding Gid	10
5	57936	GidA_sub Thi4 FAD_pyr_redox NAD_BS Flav_monooxygnse Thioredox_reduct TrkA_N Rng_mnoxygenase Moxy_FAD_binding Gid	10

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U161140	Lycopersicon Combined #2

Your Lists

Public Lists

List Contents

List Validation Report: Failed

Elements not found:

Optional: Add Missing Accessions to A List

Mismatched case

Click the Adjust Case button to align the case in the list with what is in the database.

Multiple mismatched case

Items listed here have mulitple case mismatches and must be fixed manually. If accessions need to be merged, contact the database directly.

List elements matching a synonym

Multiple synonym matches

Multiple synonym matches have to be resolved manually. Contact database administrators if necessary.

Fuzzy Search Results

Synonym Search Results

Create a New List from Unique Names:

Available Seedlots

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Create a New List from Selected Seedlots:

Manage Seedlots

List Comparison

Download column:

Your Datasets

Public Datasets

Dataset Contents

Dataset Validation Failed

Elements not found:

Your Calendar

Having trouble viewing events on the calendar?
Are you associated with the breeding program you are interested in viewing?

Calendar Permissions

Add New Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

http://www.

Event Info

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL:

Edit Event

Project:

Event Type:

Start:

End:

Description:

Web URL:

Login

Show Password

Forgot Username

If you've forgotten your username, enter your email address below. An email will be sent with any account username(s) associated with your email address.

Email Address

Reset Password

To reset your password, please enter your email address. A link will be sent to that address with a link that will enable you to reset your password.

Email Address

Create New User

Notice

Before creating a new account, please check if you already have an account using the directory search.
A link will be emailed to you. Please click on it to activate the account.
All fields are required.

First Name:

Last Name:

Organization:

Username:

Username must be at least 7 characters long.

Password:

Password must be at least 7 characters long and different from your username.

Confirm Password:

Password must be at least 7 characters long and different from your username.

Email Address:

An email will be sent to this address requiring you to confirm its receipt to activate your account.

Are you Human?