Sol Genomics Network

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This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U583160 in the current build, Tomato 200607 #2

Unigene SGN-U213475

Unigene Basic Information

Unigene ID:	SGN-U213475
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213475
mRNA sequence:	Length: 2370 bp

>SGN-U213475 Lycopersicon Combined #3 (71 members)
ATCATGAGCCCTTGTGGATATGAAGCTACTGTTTGCTGGCTTGAGATGATTATATGCAACTTAATTTTTAGAAGAAAAGTTTTGTATCCT
GGCAATTGAGGACTGAGGAACCTTCACTTCAGATTTCTCACTTGGGAGCTTCTGGTGTTGCCGCAAGCACATAATGGCGTCCAAGTATCA
TGGACCAATCAACAGAACACGGCGACCGATCTCTATATTAATTGTAATTGGTCTTTGTTGTTTCTGTTATCTAATAGGAATTTGGCAGAA
AAGTGGATCCGGAAAGGGAGATAAATTAGCACTACAAGTGACTGAGCAAACTGCTGACTGCAATGTTTTTCCACAAACCACTCTGGATTT
TGAGTCACACCATAATTATGTGGAAACGGTTGAAACTTCAGAACTAACAGTTAAAAGATTCAAATCATGTGAAGCTAAATACACTGACTA
TACTCCCTGCCATGAACAAGACCGAGCTATGAAATTCCCAAGGGAAGATATGATATATAGAGAAAGGCATTGCCCTCCAGATGATGAAAA
GCTTCGTTGTCTGATTCTAGCACCCAAAGGATACACAACTCCATTTCCATGGCCCAAAAGCCGTGATTATGCCTACTATGCTAATGTTCC
TTACAAACACTTGACAGTTGAGAAGGCAGTCCAGAACTGGGTGCAGTTTCAGGGAAACGTTTTCAAATTTCCGGGAGGAGGTACAATGTT
CCCTAGAGGAGCAGATGCATATATTGATGAACTTGCTTCCGTGGTTCCAATTGGAAGTGGCATGATACGAACTGCTCTTGACACTGGTTG
TGGGGTTGCTAGCTGGGGTGCTTACTTGCTGAAGAGGAATATTCTGGCGATGTCATTTGCACCTAAGGACAATCATGAAGCACAAGTGCA
ATTTGCTTTGGAGCGAGGTGTACCTGCTGTTATTGGAGTTCTTGGTTCCATAAGCCTTCCATTCCCATCAAGATCATTTGACATGTCTCA
TTGTTCTCGGTGTCTGATTCCCTGGGCATCAAAAGAGGGTATGTACATGATGGAAGTTGATCGAGTTCTGAGACCTGGTGGATACTGGAT
ACTGTCTGGTCCTCCACTCAATTGGAAGACCTATCACAGAGTCTGGAACAGGACCAAGGAGAATTGTAGAGCCGAGCAAAGAAGGATCGA
AGAGCATGCTGAGCTTCTTTGCTGGGAGAAGAAGTACGAAAAAGGTGATGTGGCTATATGGAGGAAAAACATAAATGGAAAGTCATGCAG
AAGAGCATCCGCCAACATATGTCAAACAAAGGATGCTGATAATGTCTGGTATAAGAAAATGGATGCATGCATAACCCCCTACCCCGACGT
GAAGAATTCTGATGAAGTAGCTGGAGGAGAATTGAAGAAGTTTCCTGCTAGGCTTTTTGCAGTTCCCCCACGTATAGCTAATGACTTGGT
TTCTGGGGTAACAGTTGAATCTTATGAAGAGGATAATAAGCTTTGGAAGAAACACGTCACTTCTTACAAGAGGAGCATTAGCCTACTTGG
CACCACTAGATACCACAACATAATGGACATGAATGCCGGACTTGGAGGATTTGCAGCAGCACTAGACTCTCCTAAACTGTGGGTGATGAA
CGTTGTGCCAACTATTGCTGAAAACACTCTTGGTGTCGTATACGAGAGGGGCTTAATTGGCATATACCATGACTGGTGTGAAGGCTTCTC
TACATACCCGAGAACGTATGACCTTCTTCATGCTAATCGCTTGTTCACTCTGTACCAGGACAAGTGTGAATTTGAAGATATTCTCCTAGA
AATGGACCGTGTTCTGCGTCCTGAAGGCGCGGTCATTCTTCGAGATGGAGTTGAAGTCTTGAACAAGGTTAGGAAAATCGCCGCGGGCTT
GAGATGGGACACTAAATTATTAGATCATGAAGATGGACCCTTGGTACCTGAGAAAATCTTTGTTGCTGTCAAACAATATTTCGTTGAAGG
CGATGAAGACCAAAGCACGCCAAATGACGATTGAGTGATGCCAATATTCGATTACATCGAGAGAAACCTGAGAATTCTGAATTGGGAAGG
TAAGATCTCCAGGCAGAGATATGAAGGTTTTTTTTCTTCTCAAATATGGCATACAACAAGTAGTGCAAGTTCCCATGTAGAGCAATTTTA
GTTATTTTTCCTTTAATGTGTGATTTTTGGAGATCTTTTTTCTCCAAATAATGAAGCAAAGCAAGAGTTCATTAGAGTGATATGTATGTT
TGGGAGCAAATTTAATAGTTGTTTCCACTAATTACAGAGTTGAATTTTGAACAATTGTAATCCCTATTTTTTTTTTTAATCTTGGTAATT
TAATTTATTTAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (71)

Alignment image suppressed for unigene with 71 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	70	DUF248	168
2	22016	DUF248	144
5	56283	DUF248	139

Preceding Unigenes (1)

Unigene	Build
SGN-U143977	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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