Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U580841 in the current build, Tomato 200607 #2

Unigene SGN-U213345

Unigene Basic Information

Unigene ID:	SGN-U213345
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213345
mRNA sequence:	Length: 1311 bp

>SGN-U213345 Lycopersicon Combined #3 (90 members)
CTTAATTTTATAGCCAGAGAAATTAAATGGGTCGTCTAAATCTTCTTATGTCAGTATTATTATCAATTTTATCAGTTAGTATTGTGTTGA
TGCCTAACTTGGCATCTGCACAATTAAAGACCAATTATTACGCCAATATTTGTCCTAATGTTGAATCCATTGTTAGAAATGTTGTTAACC
AGAAATTCAAACAAACTTTTGTCACTGTCCCTGCTGTTCTCCGTCTCTTCTTCCATGATTGCTTTGTTGAGGGATGTGATGCTTCAGTGA
TTGTATCATCAACACCAGGGAACACAGCTGAGAAGGATCATTCAGATAATCTATCATTGGCAGGAGATGGATTTGATACTGTAATTAAAG
CCAAAGCCGCTGTTGATTCAAACTCACGTTGTAAAAATAAAGTCTCTTGTGCTGACATTCTCGCTTTAGCCACCAGAGATGTCATTCAGC
TGTCTGGGGGACCATGGTACCCAGTGGAATTAGGAAGGCTTGATGGGTTCACATCAAAAGCATCGAATGTGGAAGGGAAGCTACCAAAAC
CAACATTCAATCTCAATCAACTCAATTCTATGTTTGCCTCTCATGGTCTAACTCAGGCTGACATGATCGCCCTTTCTGCGGCCCATTCTG
TTGGTTTTTCTCATTGTGGCAAATTTTCCAACCGGATCTACAACTTCAGCCCTAAAAATCCAATAGACCCAACCCTTAACAAGCAATATG
CAGCCCAATTACAAGGGATGTGTCCAAGGAATGTTGACCCAAGAATAGCCATTGACATGGATCCCAAAACTCCAAGGACATTTGACAATA
ATTACTACAAAAATTTACAACAAGGTATGGGCCTATTCACGTCAGATCAAGTGTTGTATACAGACAAAAGGTCCAAGGGAACTGTGGATC
TTTGGGCCAGTAACTCAAAATCATTCCAAAATGCTTTTGTAACTGCAATGACAAAACTGGGCCGAGTTGGTGTGAAGACGGGGAGGAACG
GAAATATTCGGTTTGATTGTGGAAGAATGAATTGAAGTGACATTTTACACAAATGGCCAATACTTATAGATTCTGTCCCAGTTAGCTTAA
TGGATTAAATTTGTCGAATAAATTAAAATTTTATTTTAATTACGCAAAAATTAGTTCGTTGAGTGTTGTCAAGGATAGGAGTTTATTTAT
ATTTTTATTTGTAGGAAGGTGAGTCCTGAATAAGGGGATTAGTCTTGAACCTTCTAATGTTTATATGAAAAATAACAGTCCTATTGTGGG
ATGTGTAATTGTTGAATAAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (9)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	70
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1

mRNA member sequences (90)

Alignment image suppressed for unigene with 90 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (9)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	23	Peroxidase	342
2	21984	Plant_peroxidase Peroxidase	274
5	56259	Plant_peroxidase Peroxidase	265

Preceding Unigenes (1)

Unigene	Build
SGN-U143841	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: