Sol Genomics Network

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This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U571844 in the current build, Tomato 200607 #2

Unigene SGN-U213324

Unigene Basic Information

Unigene ID:	SGN-U213324
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213324
mRNA sequence:	Length: 1294 bp

>SGN-U213324 Lycopersicon Combined #3 (52 members)
GGCAAAAACACATCAAAGAAAAACAAAAGTTTCTTTGAGACAAAGCAAATAACAAATGGCTTCATTTAGCTATTTGATGAGTGTTTTGGT
ATTATGTGTAATCATAGGTTATACAAATGCTCAATTAGAGCTTAATTTCTATGCTAAAAGCTGTCCAAAAGCTGAGAAAATTATTAAAGA
TTTTGTTCAGCAACAAGTTCCTAAGGCTCCAAATACTGCAGCAGCCATACTCAGAATGCATTTCCATGATTGCTTTGTCAGGGGTTGTGA
TGGATCTGTACTTCTCAATTTCACTTCGACTAACGGAAATCAAACTGAAAAACTAGCTAATCCTAATTTGACATTGAGAGGTTTCTCATT
CATTGATGCTGTTAAAAGATTAGTTGAAGCTGAATGTCCGGGAGTTGTTTCTTGTGCTGATATTGTCGCGTTGGTTGCTAGAGATGCAGT
TGTGGCTACAGGAGGTCCTTTTTGGAATGTGCCAACTGGTAGAAGAGATGGAACGATATCAAATGTGTCAGAAGCCAATGCTGATATCCC
AGCACCAACTAGTAACTTTACTAGACTACAACAATCCTTCGCGAAGAAAGGTCTTGATCTGAATGACCTGGTCCTTCTATCAGGTGCCCA
TACTATTGGAGTGTCTCGTTGCTCATCATTTTCAGAGCGTCTATACAATTTCACCGGGGTTGTAGGTACACAAGATCCATCTCTAGACAG
TGAATATGCGGATAATCTCAAGTCAAGAAAATGCAGATCAATCAATGACAATACTACTATAGTAGAAATGGATCCAGGTAGTTTCAAGAC
ATTTGATCTCAGCTACTTCAAGCTTTTGCTCAAAAGGAGAGGTCTGTTCCAATCCGATGCAGCATTGACAACACGTACCTCAACGAAATC
GTTTATCGAGCAGCTTGTAGATGGACCACTCAACGAATTTTTCGATGAATTTGCTAAATCGATGGAGAAAATGGGAAGAGTTGAAGTTAA
GACAGGGAGTGCTGGTGAAATCAGGAAGCATTGTGCATTTGTGAATAGTTAAAATTGAAGTTTTAATTAATGATTTTGTGTTTTGTATTT
ATGATTTATGTGTACTGTTGACTGTTGAGTTAATTGTTTGGTGTAATATGTATCATGTACTTTTTTATATTTATTTCAATTGTAATTTTG
CAGTTTGTTGGTGTTTTGTAGCAATAAAAGTGATGTGATGAAGAGCATTTCCAAAAAATTGAAAAAAAAAAGGGATCTTTTCCTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (8)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	12
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	12
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	12

mRNA member sequences (52)

Alignment image suppressed for unigene with 52 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	23	Peroxidase	342
2	21984	Plant_peroxidase Peroxidase	274
5	56259	Plant_peroxidase Peroxidase	265

Preceding Unigenes (1)

Unigene	Build
SGN-U144043	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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