Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been superseded by SGN-U567538 in the current build, Tomato 200607 #2

Unigene SGN-U213143

Unigene Basic Information

Unigene ID:	SGN-U213143
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213143
mRNA sequence:	Length: 1260 bp

>SGN-U213143 Lycopersicon Combined #3 (47 members)
TTTAAAGAAAGAAAAAAAAAACATGGCCTTGACTTTGAAGTCATTAATAACTCCTTTGCTTTTTGGTGCTTTCTTTATCCTGATCTTACA
GGTTGCTGCAGAGAAGCCAATAACTGAAGCAAAACTTGAATCTGCAATCCTTCAAGACTCGATCGTCAAACAAGTCAATGAGAATGCCGA
AGCTGGATGGAAAGCTGCATTCAACCCTCAATTATCGAATTTCACGGTTTCCCAATTTAAGCGCCTTCTTGGAGTTAAGCCTGCAAGAGA
AGGTGATTTGGAGGGAATTCCTGTTCTAACTCATCCAAAACTTAAGGAGTTACCAAAAGAGTTTGATGCACGAAAGGCTTGGCCTCAATG
CAGCACAATTGGAAGAATTCTAGATCAGGGACATTGCGGTTCTTGTTGGGCTTTTGGTGCTGTTGAGTCGCTGTCTGATCGTTTCTGTAT
CCATTATAATTTGAGTATCTCTCTGTCTGTAAATGATCTGTTAGCGTGCTGTGGCTTTTTATGCGGGAGTGGTTGTGATGGTGGATATCC
TATAGCAGCATGGCGATACTTTAAACGTAGGGGAGTGGTCACAGAAGAGTGTGATCCTTACTTCGACACTACTGGATGTTCCCACCCTGG
TTGCGAACCACTATACCCCACTCCAAAATGTCATAGGAAGTGTGTCAAGGGGAATGTGTTATGGAGGAAATCAAAGCATTACGGTGTAAA
TGCATACAGGGTCAGCCATGATCCCCAGAGTATCATGGCGGAAGTATACAAAAACGGACCAGTTGAGGTCTCTTTTACTGTCTACGAGGA
TTTTGCTCACTACAAATCAGGAGTTTACAAGCATGTAACAGGGGGAAACATGGGAGGACACGCTGTTAAGCTTATCGGATGGGGAACTAG
CGAGCAAGGAGAGGACTATTGGCTCATTGCTAATTCTTGGAATAGAGGCTGGGGTGAAGATGGATACTTCAAGATTAGAAGAGGAACAAA
TGAGTGTGGCATTGAACATAGTGTGGTTGCAGGATTGCCTTCAGCAAGAAATTTGAATGTGGAACTTGGTGATGCTGTCCTTGATGCCTC
AATGTAAATTGATATCTCTTCAACAAGAACATTACATAATAATACTAGCAAATTAATATGATACTGGGGATGAAAAAACCTTATGAATTT
GCATATTTATCTTGTCGATTTAATCTGTATAATTCATAATTAATACTTGTTCTAATAGTAACTTTTCACTTTTCAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (14)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	10
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	14
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	3
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOS	suspension cultures	8026	1

mRNA member sequences (47)

Alignment image suppressed for unigene with 47 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	73	Peptidase_C1	165
2	22446	Peptidase_C1 Pept_cys_acsite	29
5	56616	Peptidase_C1 Pept_cys_acsite	29

Preceding Unigenes (1)

Unigene	Build
SGN-U143734	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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