Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U578351 and SGN-U580640 in the current build, Tomato 200607 #2

Unigene SGN-U213081

Unigene Basic Information

Unigene ID:	SGN-U213081
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213081
mRNA sequence:	Length: 1363 bp

>SGN-U213081 Lycopersicon Combined #3 (126 members)
AACTAGTCTCGAGTTTTTTTCTTCTCTACTCTTCTAATGGATCGTCTTTTTCTCTTATCTTTTCTCGCTTTCGCTCTTTTCTCGTCGGCG
ATTGCTTTCTCCGACGACGATCCGTTGATCCGACAAGTTGTATCGGGAAACGATGACAACCATATGTTAAACGCCGAGCATCACTTTTCA
CTTTTTAAGGCTAAGTTTGGAAAGATCTATGCTTCTCAGGAGGAACATGACCATAGATTGAAGGTATTCAAGGCTAATCTTCACCGTGCG
AAGCGTCACCAGCTCCTTGACCCTTCCGCTGAGCACGGTATTACGCAGTTCTCCGATTTGACTCCGTCGGAGTTTCGCCGGACTTACCTT
GGACTTAACAAGCCCCGACCTAATCTTAATGCCGAGAAAGCTCCAATCCTCCCGACTAAAGATCTTCCATCTGATTTTGACTGGCGTGAA
AAAGGAGCCGTCACCGATGTTAAAAATCAGGGCTCATGTGGATCATGCTGGTCATTCAGTACGACTGGAGCAGTGGAGGGAGCTCACTTT
TTGGCGACCGGAGAGCTTGTGAGCCTTAGTGAACAGCAGCTTGTGGATTGTGACCATGAGTGTGACCCGGTGGAAAAAAATGATTGTGAT
GCAGGTTGCAACGGTGGTCTTATGACTACTGCCTTCGAGTATACCCTTAAGGCTGGAGGTCTCCAACTGGAGAAAGACTATCCTTACACT
GGCAGGAATGGCAAATGCCACTTTGACAAGAGCAGAATTGCTGCCTCTGTATCCAACTTCAGTGTTGTTGGTCTTGATGAAGACCAAATT
GCTGCTAACCTGCTGAAACATGGTCCTCTTGCAGTGGGGATCAATGCTGCTTGGATGCAGACATATGTTAGAGGAGTTTCATGCCCATTA
ATTTGCTTCAAGCGTCAGGATCATGGTGTCCTCCTAGTCGGTTATGGATCTGAAGGTTTTGCACCTATACGTCTCAAGAATAAGCCTTAC
TGGATCATCAAGAATTCTTGGGGAAAGACTTGGGGAGAACACGGATATTACAAGATCTGCAGGGGTCACAATATCTGCGGAGTTGATGCC
ATGGTCTCTACTGTGACTGCCACACATACTACTAATCCTAATCTTTAAGATGAAATATATCCCAAGAATGTTGTCTGTAATCAGCGATTT
TACTGCCATTACCCTAATCTTTGTAAATATATTGGTCAGTAATGTATTGTGAACTCATGTCTTGGATTTCATCAGCACCTTATTATCGTG
CCTCAAACCATGTACTGGGATTTGTATCTGTAGTTTTATACTGCAAATAATTGGAGTTTGAATTTTTAAGTTAAAAAAAAAAAAAAAAAA
AAAAAAACTCGAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (25)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	6
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	18
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	9
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	18
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	5
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	4
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	7
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	5
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	7
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	4
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	5
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTOS	suspension cultures	8026	4
Solanum lycopersicum	cTSB	seed	1880	4
Solanum lycopersicum	cTSC	seed	2256	3
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	2

mRNA member sequences (126)

Alignment image suppressed for unigene with 126 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (3)

Annotations (manual: 1 | blast: 2 | go: 3 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	73	Peptidase_C1	165
2	22027	Peptidase_C1	128
5	56289	Peptidase_C1	126

Preceding Unigenes (1)

Unigene	Build
SGN-U143664	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: