Sol Genomics Network

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This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U579621 and SGN-U590979 in the current build, Tomato 200607 #2

Unigene SGN-U213040

Unigene Basic Information

Unigene ID:	SGN-U213040
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	213040
mRNA sequence:	Length: 1440 bp

>SGN-U213040 Lycopersicon Combined #3 (130 members)
TCCCCCATAGTTCCTCAGTAGCCGTCCCTTGCAGGTTGAAGGAGGAGAAGGATGTCTCACAGGAAGTTTGAGCACCCAAGACACGGTTCT
TTGGGATTTCTCCCCAGGAAGCGTGCTGCCAGACACAGGGGAAAGGTGAAGGCATTCCCAAAGGATGACCCAAGCAAGCCTTGCAAGCTA
ACTGCCTTCTTGGGTTACAAGGCTGGAATGACTCACATTGTCAGAGAAGTTGAGAAACCTGGATCAAAACTCCACAAGAAAGAGACATGT
GAAGCTGTTACCATTGTTGAAACACCTCCTATGGTGATTGTTGGTGTTGTTGGGTATGTGAAGACCCCTCGTGGTCTTCGTTGCCTGAAC
ACAGTCTGGGCTCAACATCTCAGTGAAGACATTAAGAGGAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCCTTCCTGAAGTAC
TCTAAGAAATATGAAACTGATGAAGGGAAAAAGGATATCCAGGCACAGCTGGAGAAATTGAAGAAGTATGCTTGTGTCATCCGTGTGTTG
GCTCACACTCAGATAAGGAAGATGAAGGGTTTGAAACAGAAGAAAGCCCATTTGATGGAGATCCAGGTTAATGGAGGATCAATTGCTCAG
AAGGTTGACTTCGCATATGGTTTCTTTGAGAAGCAGGTTCCAGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATTGGTGTC
ACCAAGGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGTGTGACACGTCTTCCTCGCAAAACCCACAGGGGTCTACGTAAGGTTGCT
TGTATTGGTGCCTGGCATCCTGCTAGAGTTTCATTCACAGTGGCTCGTGCTGGTCAAAATGGATACCATCACCGTACTGAGATGAACAAG
AAGGTTTACAAGCTCGGCAAGGTTGGACAGGAGTCCCACACTGCCCTAACTGAGTTTGACAGGACTGAGAAAGACATTACACCTATTGGT
GGATTTCCCCATTATGGTGTGGTGAAGGAGGATTACCTGTTGATCAAGGGATGCTGTGTTGGTACTAAGAAGAGGGTTGTAACTCTGCGT
CAATCCCTTCTCAACCAGACTTCTCGTGTTGCTCTTGAGGAGATTAAGCTGAAGTTCATCGACACATCCTCCAAGTTTGGACATGGTCGC
TTCCAGACCACCCAAGAGAAGCAGAAATTCTATGGACGCCTGAAGGCTTGAATGTTTCAGCATCCACTTTGTTTGGGTTAAACCATAAGT
TTTAAACAATTTATTGTTCCTACTAGTGTTTTTATTTTTGTGAGGTTTTTCTGGAGACAATTTTTGACATTTTAAAGCTTTTTGTTGCAT
TAAGGATTCTAGTTGAGAACTTCTATATAATGCAAAAGTTTTGTTGCTTTGTTCAAAAAAAAAAAAAAAAAAAAAAACTCGAGACCTGCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (23)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	3
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	11
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	10
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	3
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	4
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	4
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	10
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	17
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	7
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	12
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	17
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	10
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSD	seed	1504	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (130)

Alignment image suppressed for unigene with 130 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 2 | go: 4 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	447	Ribosomal_L3	39
2	22531	Ribosomal_L3	26
5	56706	Ribosomal_L3	25

Preceding Unigenes (1)

Unigene	Build
SGN-U143595	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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