Sol Genomics Network

Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U578028 and SGN-U592025 in the current build, Tomato 200607 #2

Unigene SGN-U212777

Unigene Basic Information

Unigene ID:	SGN-U212777
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212777
mRNA sequence:	Length: 3298 bp

>SGN-U212777 Lycopersicon Combined #3 (106 members)
CTTAATGAGTTCTTTCTCAAGTCACTCACACTCGAAGATGTTCCTAATTATGGAAAAATCCATTTTGTATGCAATTCTTGGGTTTATCCT
GCTTTTAGATACCAAGTCTGACCGCATTTTCTTTGCCAATCAGGCTTATCTCCCAAGTGAAACACCACAACCATTGCGAAAATACAGAGA
AAATGAACTGGTAGCTTTGCGAGGAGATGGAACTGGAAAGCTTGAAGAATGGGACAGGGTTTATGATTATGCTTGCTACAATGACTTGGG
TGAACCAGATAAGGGGGAAGAGTATGCTAGGCCTATCCTTGGAGGGTCCTCTGAGTACCCGTATCCTCGTAGAGGCAGGACAGGCCGCGA
ACCAACCAAAGCAGATCCTAATTGCGAGAGCAGGAACCCATTGCCTATGAGCTTAGACATATATGTCCCAAGGGACGAGCGATTTGGTCA
TGTGAAGAAGTCAGACTTTTTGACGTCGTCCTTAAAATCCTCTTTGCAAACGCTTCTCCCTGCGTTTAAGGCTTTGTGCGATAACACGCC
TAATGAGTTCAATAGCTTTGCGGATGTACTTAATCTCTATGAAGGAGGAATCAAGTTGCCTGAAGGCCCTTGGTTGAAAGCCATTACTGA
TAACATTTCCTCAGAGATACTAAAAGACATCCTTCAAACGGATGGTCAAGGCCTACTTAAGTACCCAACTCCTCAGGTTATTCAAGGCGA
TAAAACTGCATGGAGGACGGATGAAGAATTTGGGAGAGAAATGTTGGCAGGATCCAATCCTGTCTTAATCAGTAGACTCCAAGAATTTCC
TCCGAAGAGCAAGTTGGATCCAACCATATATGGAAACCAAAACAGTACAATTACCACAGAACATGTACAGGATAAGTTGAATGGATTAAC
AGTGAATGAGGCAATCAAGAGTAACAGGTTATTCATATTGAACCACCATGACATCGTGATGCCACTATTGAGGAAAATTAACATGTCAGC
AAACACAAAAGCCTATGCCTCAAGAACTCTGCTCTTCCTACAAGATGATAGAACTTTGAAGCCACTAGCAATTGAACTAAGCTTGCCACA
TCCAGACGGAGATCAATTTGGTACTGTTAGTAAAGTATATACACCAGCTGACCAAGGTGTTGAAGGTTCTATCTGGCAGTTTGCCAAAGC
CTATGTAGCAGTGAATGACATGGGCATTCATCAGCTCATTAGCCACTGGTTGAATACACACGCGGTGATCGAACCATTTGTGATTGCAAC
AAATAGGCATCTAAGTGTGCTTCATCCCATTCATAAACTTCTTCATCCTCATTTCCGTAACACGATGAACATAAATGCTTTAGCAAGAGA
GACCTTGACCTATGATGGTGGTTTTGAGACGTCTCTTTTTCCTGCCAAATATTCCATGGAAATGTCAGCAGCAGCTTACAAAGATTGGGT
TTTCCCTGAACAAGCACTTCCTGCTGATCTCCTCAAAAGAGGAGTGGCTGTTGAGGACTTGAGCTCCCCACATGGCATTCGTTTACTGAT
TCTGGACTATCCATATGCTGTTGATGGCTTGGAAATTTGGGCAGCAATCAAAAGTTGGGTAACAGAATATTGCAAGTTCTATTACAAATC
TGACGAGACAGTAGAGAAAGACACTGAACTCCAAGCTTGGTGGAAGGAGCTCCGCGAAGAAGGACATGGCGACAAGAAAGATGAGGCTTG
GTGGCCTAAACTGCAAACTCGACAAGAGCTCAGAGATTGTTGCACCATCATTATATGGATAGCTTCAGCACTTCATGCAGCACTCCATTT
TGGCTTATACTCTTACGCTGGTTATCTCCCTAATCGCCCTACTTTAAGCTGTAATTTGATGCCAGAGCCAGGAAGTGTTGAGTATGAAGA
GCTCAAGACAAATCCAGACAAGGTATTCCTAAAAACATTTGTTCCTCAGTTGCAATCACTGCTTGAAATTTCCATCTTTGAGGTCTCGTC
AAGGCATGCTTCAGATGAGGTTTACTTGGGACAAAGGGACTCAATTGAATGGACAAAGGATAAAGAACCACTTGTAGCTTTTGAGAGGTT
TGGAAAGATGCTAAGTGATATCGAGAATCGAATTATGATAATGAATAGTCATAAGAGTTGGAAGAACAGGTCAGGGCCTGTTAACGTTCC
ATATACGTTGCTCTTTCCCACAAGTGAAGAGGGACTCACAGGCAAAGGAATTCCCAACAGTGTGTCTATATAGAACTTATTATTCAATCA
GTTTGTTGTGCTTGTGTTACTTGTTATTCCCAACCAAATAAACTCTTTGTTCCAAATAAAGAGTATTGTATTGTATTGTCTTGTGTGTTG
TGTTGTATTGTATTATATTGTATAGTATTATTGATTTAAATACAATGTTTGTTGCACTTGTTTCTTGTTATTCCCTTCTCCATATCAGAG
AAGTGGCTTAAACCCTAGCCGCTCCTCATTTCGTTTCTCTTTCTCTCTCCTTAAACCCTGAAACTTCCTCTCTCGCTCAGATTTGTGAAT
TTGTCTGCACAAATGGCTTTCTGCAACAAACTCGGTGGTCTGTTGAGGCAGAGCATTTCCACGGGAAATGCAGTAAGTGCAAATTCACCA
ACTCCAGCGATGCTTAATGCCATCCGGTGCATGTCATCAAAACTTTTTGTTGGTGGTCTTTCATGGGGAACAGATGATCAGTCACTGAAA
GAGGCCTTTACTAGCTTTGGTGATGTTGTTGATGCAAAGGTAATCATTGACAGAGATTCTGGCAGATCAAGGGGATTCGGATTTGTGAAC
TTCTCAGATGAAGATTGTGCAAAAGAAGCTATGAACGCAATGGACGGTCAGCAACTGCATGGAAGGAATATCCGTGTTAATTTAGCCCAA
GAGCGTGCCCCTAGAAGTGGTGGATATGGGGGTGGATATGGTGGTGGTGGTGGCGGCGGTGGATATGGTGGTGGTGGTGGCGGCGGTGGA
TATGGTGGGGGCTATGGTGGTCAAGCTAGAGATAACGATGCCTTCTAAGTCAGTTTTATCTTTGCTATTAGCTGTCATGTGTGCATGACA
ATATTTATCTTAATAGAGAGGACTCAGTGTGATAGCTTTTGTTGAATTTATCTTTTAAAACTTCTTTTCTGCAAGGTTTTTTTAGTATCA
ATAATTTTTCCAGATTTTATCACAAAGGTCATTTGTGCCCTAGATGCTGTTTATTGTAATCAATATTCAACTATGCGGCACTTTGCAATA
TTGTTCTTTTATTTATAGTGAAGACGATTAATATGAAAATGATTTAAAATGGAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	12
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	2
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	4
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	52
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	1
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	17
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	2
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	6
Solanum lycopersicum	cTSD	seed	1504	2

mRNA member sequences (106)

Alignment image suppressed for unigene with 106 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (8)

Annotations (manual: 4 | blast: 2 | go: 4 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3	RNA_rec_mot	1201
2	22092	Plant_lipoxygnse Lipoxygenase Lipoxygenase_LH2	71
5	56340	Plant_lipoxygnse Lipoxygenase Lipoxygenase_LH2	69

Preceding Unigenes (1)

Unigene	Build
SGN-U143306	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: