Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U579436, SGN-U581047, SGN-U581159, and SGN-U590467 in the current build, Tomato 200607 #2

Unigene SGN-U212597

Unigene Basic Information

Unigene ID:	SGN-U212597
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212597
mRNA sequence:	Length: 1333 bp

>SGN-U212597 Lycopersicon Combined #3 (53 members)
GCCTCTCTTCCCTACGCCATCTTGTCTTCTATATATATATATACACAAATACATTATCTCTATATGCAGAGTCTTCTCCATTAAGCTCGA
ATAAATTCCTGATTCATGATGTCGAGTTTCTGTTCACAGTCGGCAAACGACGGCCACAACTCTTTCACCTGCGCCGGCGAGTCATCGCCG
GCAGCCGTGTCTGTCGGCGGAGGCGTAGGAGGAGGAGGAGAGATCATGCTGTTTGGCGTGAGGGTGAAGGTAGACCCTATGAGGAAAAGC
GTGAGTTTGAACAATCTGTCTCAGTATGAGCAGCCTAATTCTAATGATAATAATAATAATAATAGCAACAGCGGAAATAACAATGACGCT
TCTAAAGTTGCCGCCGACGAGGGTTATGCCTCTGCCGACGACGCTGTTCCTCACCACTCCGGTAGTGGCCGTGAGCGTAAGCGAGGAGTT
CCATGGACGGAGGAAGAGCACAAGCTATTCCTTTTGGGATTGCAGAAAGTGGGAAAAGGAGACTGGAGAGGAATCTCTAGAAACTTCGTA
AAAACTCGCACACCGACACAGGTTGCAAGTCATGCTCAGAAATATTTCCTCCGGCGAACTAACCTCAATCGCCGGCGCCGCCGTTCTAGC
CTCTTCGATATCACCACTGACTCGGTATCTGTACTAGCAACAGAAGAAACGAAAAATCTGCAACGACACTCCATTCCATCATTGCCTTGT
ATAGAAACATCAAAAATGAATGCATTTCAGGTGACATCTGTGCCAGTAAATTTTGGGCCTGTTATGTTGCCAGAGAACCCAATAGAAAGT
CCAATCCTTAGACAAGGAAATCAAAGTTATTATAATGGATCATCATCAATATTCCTCCGGCCGGCTCCTGTTGTTGTTTCGTTGCCTAAT
TCATCAAAAACAGCTGACTTTAACTTGAATCAAAGCTCAGCAATGGAGACATCTTCGTTATCGTTGACATTGTCGTTATCACCATCATCA
TCATCTACTAGACACTCAGGATTCCAAGTGATGTCAAATTTTAAAAATGGAGAGAGCATCATCAGTGTGGCATGACACACAAGAATCTCT
ATTATTAAATAACTAAAAGCTAGAAGAAGAAAAAAAAAACATAGAAAAGGCAAATGGGAGTTCTATAATGGAGTTATATTATTAGTGGAG
TAATATGTATGGTCCTTTTGTTTTGTACAGACCAGAAATATGTCATTATCATGCCTTCTTTATTTGTTTTGTAGTTGGAAGATAAAAATT
AACAATGAATAATATTGGACTTTGTGCTTGTTTTTTGTTGCTAAAAAAAAAAAAAAAAAACTCGAGACTAGTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (17)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	8
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	3
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	7
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLES	leaf 4 weeks	5243	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	9
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	2
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1

mRNA member sequences (53)

Alignment image suppressed for unigene with 53 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 2 | blast: 2 | go: 2 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	111	Myb_DNA_binding	121
2	22066	Myb_DNA_binding	83
5	59160		7

Preceding Unigenes (1)

Unigene	Build
SGN-U143626	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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