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Unigene SGN-U212280

Unigene Basic Information

Unigene ID:	SGN-U212280
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	212280
mRNA sequence:	Length: 390 bp

>SGN-U212280 Petunia hybrida #1 (1 members)
TTGATAATGAGATTTCTTTTAAGAAGAATTGTGAAATTGAACGGAAAAAAGGTACCCCTTGGACTGAAGAAGAACACCGCTTATTCCTTA
TTGGGCTGGAGAAATACGGGAAGGGTGATTGGAGAAGCATTTCAAGAAACGTAGTGGTAACAAGGACCCCAACACAAGTGGCCAGTCATG
CTCAAAAATACTTCATCAGACAGCAGGCAATGAAGAAAGAACGGAAAAGGTCCAGCATCCATGATATTACAACTGCAGTGGATACCAACC
CAGTGCCTCCTCAAAGCAGTTTTCATAATCAAAGAGGCTCTCAAGATTTCAACTTTACCATGTAGTGGTGAAGCGTAGCNCACAAAAGAA
CACTCATACATGTGAATAGAAAGGCCACCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	cPHA	stamens stamens from open flowers on 18-20 week old plants	6801	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E535475
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|6688529\|emb\|CAB65169.1\|	198.7	1.5e-50	90.57	318 bp (81.5%)	3
Description:	I-box binding factor [Solanum lycopersicum]
arabidopsis	blastx	At5g04760.1	143.7	2.5e-35	70.87	303 bp (77.7%)	3
Description:	At5g04760.1 68412.m00455 myb family transcription factor I-box binding factor (LeMYBI gene), Ly…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005634 nucleus
GO:0003677 DNA binding

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P207675 (110 Aa)

DNEISFKKNCEIERKKGTPWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKYFIRQQAMKKERKRSSIHDITTAVDTNP
VPPQSSFHNQRGSQDFNFTM

SignalP predicts non-secretion with a score of 0.023

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P44846 (114 Aa)

DNEISFKKNCEIERKKGTPWTEEEHRLFLIGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKYFIRQQAMKKERKRSSIHDITTAVDTNP
VPPQAVFIIKEALKISTLPCSGEA

SignalP predicts non-secretion with a score of 0.023

IPR006447 Myb-like DNA-binding region, SHAQKYF class
IPR001005 Myb, DNA-binding

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	111	Myb_DNA_binding	121
2	22066	Myb_DNA_binding	83
5	56425	Myb_DNA_binding	44
1.1	101455	Homeodomain-like	138
2	118493	Homeodomain-like	82
5	129090	Homeodomain-like	43

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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