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Unigene SGN-U209603

Unigene Basic Information

Unigene ID:	SGN-U209603
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	209603
mRNA sequence:	Length: 358 bp

>SGN-U209603 Petunia hybrida #1 (1 members)
GGTGGGGCGTCTAGACTAGTGGATCCCCGGGCTGCAGGAATCGGCGAGGCTGGACCACCAATGGATTTACTGGGCTGGACCCATTATTGG
TGGTGGCCTTGCCGGTGTTGTCTATGAACTTCTCTTCATCAATCACTCTCACGAGCCATTGCCTAGTGGTGACTTTTAAGATTATGAAAT
TTCAATGTCTTGAATTTCTCTTTTAATTTTTGCTTGTGTCTATGTTTGTTGGACACTGTTGAAGTGTACTGTGTATTCGGACGGCTTTTG
TTATTTCCTATGTATTTATTTTCTTGATCTCGCTGGTGTATAAGGTAGTTTAAATTTTCAAATATTTTTCAGTTAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
TIP1-1	aquaporin-like protein 1-1	aquaporin-like protein

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	Petunia-DevA	all floral organs several	2870	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E520785
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|17940748\|gb\|AAL49753.1\|	86.27	1.1e-16	100	111 bp (31.0%)	2
Description:	gi\|17940748\|gb\|AAL49753.1\| aquaporin-like protein [Petunia x hybrida]
arabidopsis	blastx	At2g36830.1	61.62	7.1e-11	56.76	111 bp (31.0%)	2
Description:	At2g36830.1 68409.m04088 major intrinsic protein (MIP) family contains Pfam profile: MIP PF00230
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006810 transport
GO:0005215 transporter activity
GO:0016020 membrane

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P204935 (63 Aa)

TSGSPGCRNRRGWTTNGFTGLDPLLVVALPVLSMNFSSSITLTSHCLVVTFKIMKFQCLEFLF

SignalP predicts non-secretion with a score of 0.395

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P42297 (55 Aa)

GGASRLVDPRAAGIGEAGPPMDFWAGPIIGGGLAGVVYELLFINHSHEPLPSGDF

SignalP predicts non-secretion with a score of 0.119

IPR000425 Major intrinsic protein

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	62	MIP	192
2	22002	MIP	174
5	77898		1
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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