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Unigene SGN-U209082

Unigene Basic Information

Unigene ID:	SGN-U209082
Unigene Build:	Petunia hybrida #1
Date:	2004-03-30
Organism:	P.hybrida
Alternative ID:	209082
mRNA sequence:	Length: 227 bp

>SGN-U209082 Petunia hybrida #1 (1 members)
ACAACACAAATTATCAATGATGCTCTAAACTGTGCCCAAGATAATGCTCAGCCCTATGTAATTCATCAAGGCTGGTATTACAATGAGAAC
GTTAGGTTACCACTACAATGAAAAATGTAGACTTTATGGGTGAAGGCCCAACCAACACCAAGATAACTGGCAACAAAAGTTACTACAATG
GTGTCCCAATTTACAATACTGCCACTGTTGCCATCAATGGAGAAGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Petunia x hybrida	cPHA	stamens stamens from open flowers on 18-20 week old plants	6801	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E530918
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P204398 (49 Aa)

SFSIDGNSGSIVNWDTIVVTFVASYLGVGWAFTHKVYIFHCSGNLTFSL

SignalP predicts secretion with a score of 0.446

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P45118 (76 Aa)

TTQIINDALNCAQDNAQPYVIHQGWYYNENVXVTTTMKNVDFMGEGPTNTKITGNKSYYNGVPIYNTATVAINGEG

SignalP predicts non-secretion with a score of 0.045

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	31	Pectinesterase	291
2	21997	Pectinesterase	205
5	56268	Pectinesterase	197
1.1	101397	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	298
2	118428	Virulence factor pectin lyase fold Pectinesterase - Cellular Component: cell wall (GO:0005618) - Molecular Function: pectinesterase activity (GO:0030599) - Biological Process: cell wall modification (GO:0042545)	202

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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