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Unigene SGN-U207332

Unigene Basic Information

Unigene ID:	SGN-U207332
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207332
mRNA sequence:	Length: 225 bp

>SGN-U207332 Solanum melongena #2 (1 members)
CATATGTGGCTAAAGAACTTGTAGATATGGGTTGCTTTGAAATTTCTCTCGGTGACACAATTGGAGTTGGTACTCCAGGTACTGTTATTC
CAATGCTTGACGCTGCAACTCAAGTTGTCCCTGTAGAGAGGCTTGCTGGTCATTTTCATGACACTTATGGACAAGCTCTTTCTAACATTC
TTGTGTCATTGCAAATGGGGATCAGCATAGTGGATTCATCTGTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E518466
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30683260\|ref\|NP_850087.1\|	125.6	1.8e-28	79.73	222 bp (98.7%)	3
Description:	hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / H…
arabidopsis	blastx	At2g26800.1	125.6	4.6e-30	79.73	222 bp (98.7%)	3
Description:	At2g26800.1 68409.m02916 hydroxymethylglutaryl-CoA lyase -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P209802 (74 Aa)

YVAKELVDMGCFEISLGDTIGVGTPGTVIPMLDAATQVVPVERLAGHFHDTYGQALSNILVSLQMGISIVDSSV

SignalP predicts non-secretion with a score of 0.061

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30849 (75 Aa)

YVAKELVDMGCFEISLGDTIGVGTPGTVIPMLDAATQVVPVERLAGHFHDTYGQALSNILVSLQMGISIVDSSVX

SignalP predicts non-secretion with a score of 0.061

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	488	HMGL-like	36
2	23396	HMGL-like	13
5	57632	HMGL-like	12
1.1	101504	Mov34/MPN/PAD-1	97
2	120167	Pyruvate carboxyltransferase - Molecular Function: catalytic activity (GO:0003824)	10
5	131843	Pyruvate carboxyltransferase - Molecular Function: catalytic activity (GO:0003824)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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