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Unigene SGN-U207295

Unigene Basic Information

Unigene ID:	SGN-U207295
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207295
mRNA sequence:	Length: 407 bp

>SGN-U207295 Solanum melongena #2 (1 members)
TTTTTTTTTTTTTTTTTTTTTCTTATTTTTTCGGCTACAAAGGATTACTCTGGTCATATTGGGGGGAGACAGCCATACTACAAAAAGAAC
ATCATCCCAGGCAACTCGAGCCACAAACTTCATTCCCGAGTAAAGATAAGGAGGAAAGCAGCAATCTATATCTATCTAATGCTTTCAAAA
ATTGAAATCCTCATTACAGCCGCAAAGACGGAGAAGATAACCTATTTATTACCACCTGTTCTTGGGTGGTTCGACTTTATAAATTCTGAC
TATCCAATTAGAAGTCGCGAACGCCTCTTCCAAGTATTCAAGCTTGATGTCCTTGATTCCTATTTCAACTCCCCTGGCTCTATCATATTC
AGGAGGCTGGCCATATTCTGTTGTCAGCTCACCAAAGCGATAATAAG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E519264
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|38344929\|emb\|CAE03245.2\|	110.9	3.6e-24	89.47	171 bp (42.0%)	-3
Description:	gi\|38344929\|emb\|CAE03245.2\| OSJNBa0018M05.20 [Oryza sativa (japonica cultivar-group)]
arabidopsis	blastx	At1g34130.1	105.9	6.4e-24	84.21	171 bp (42.0%)	-3
Description:	At1g34130.1 68408.m03840 integral membrane protein -related similar to integral membrane protei…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30815 (44 Aa)

YYRFGELTTEYGQPPEYDRARGVEIGIKDIKLEYLEEAFATSNW

SignalP predicts non-secretion with a score of 0.02

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P209764 (135 Aa)

FFFFFFFLIFSATKDYSGHIGGRQPYYKKNIIPGNSSHKLHSRVKIRRKAAIYIYLMLSKIEILITAAKTEKITYLLPPVLGWFDFINSD
YPIRSRERLFQVFKLDVLDSYFNSPGSIIFRRLAIFCCQLTKAII

SignalP predicts secretion with a score of 0.609

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1531	Oligo_trans_STT3 DUF81	12
2	23651	Oligo_trans_STT3 DUF81	11
5	57985	Oligo_trans_STT3 DUF81	10
1.1	102885	Oligosaccharyl transferase STT3 subunit - Molecular Function: oligosaccharyl transferase activity (GO:0004576) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: membrane (GO:0016020)	9
2	120335	Oligosaccharyl transferase STT3 subunit - Molecular Function: oligosaccharyl transferase activity (GO:0004576) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: membrane (GO:0016020)	9
5	130618	Oligosaccharyl transferase STT3 subunit - Molecular Function: oligosaccharyl transferase activity (GO:0004576) - Biological Process: protein amino acid glycosylation (GO:0006486) - Cellular Component: membrane (GO:0016020)	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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