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Unigene SGN-U207264

Unigene Basic Information

Unigene ID:	SGN-U207264
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	207264
mRNA sequence:	Length: 362 bp

>SGN-U207264 Solanum melongena #2 (1 members)
CATGGGTATCGATCTGAAGGCCGGAGGTAAGAGCAATAAGACGAAGCGTACAGCCCCTAAATCTGACGATGTGTACCTCAAGCTCCTCGT
CAAGCTTTACCGGTTCTTGGCAAGGAGGACCGGAAGCAAGTTCAACGCGGTGATTCTTAAGAGGCTCTTCATGAGCAAGATTAACAAGCC
GCCACTTTCTCTGTCGAGGTTGATTTCTTACGCCAAAGGAAAGGAGGATAAGATTGTTGCCATTGTGGGTACTATTACCGACGATGTTAG
GGCCTATGAAGTTCCAAAGTTGAGGGTGTGTGCCTTGAGGTTCACAAAGACAGCCAGGGCGAGGATTGAGAAGGCTGGTGGTGAATGCTT
GA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E515995
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|28798549\|gb\|AAO46881.1\|	195.3	1.6e-49	80	360 bp (99.4%)	2
Description:	60S ribosomal protein [Medicago sativa]
arabidopsis	blastx	At3g05590.1	189.9	1.7e-49	78.33	360 bp (99.4%)	2
Description:	At3g05590.1 68410.m00570 60S ribosomal protein L18 (RPL18B) similar to GB:P42791
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003735 structural constituent of ribosome
GO:0006412 protein biosynthesis
GO:0005622 intracellular
GO:0005840 ribosome

Protein prediction analysis (3)

Prediction based on longest six frame method

>SGN-P209732 (120 Aa)

MGIDLKAGGKSNKTKRTAPKSDDVYLKLLVKLYRFLARRTGSKFNAVILKRLFMSKINKPPLSLSRLISYAKGKEDKIVAIVGTITDDVR
AYEVPKLRVCALRFTKTARARIEKAGGECL

SignalP predicts non-secretion with a score of 0.059

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P209733 (120 Aa)

QAFTTSLLNPRPGCLCEPQGTHPQLWNFIGPNIVGNSTHNGNNLILLSFGVRNQPRQRKWRLVNLAHEEPLKNHRVELASGPPCQEPVKL
DEELEVHIVRFRGCTLRLIALTSGLQIDTH

SignalP predicts non-secretion with a score of 0.203

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P30787 (121 Aa)

MGIDLKAGGKSNKTKRTAPKSDDVYLKLLVKLYRFLARRTGSKFNAVILKRLFMSKINKPPLSLSRLISYAKGKEDKIVAIVGTITDDVR
AYEVPKLRVCALRFTKTARARIEKAGGECLX

SignalP predicts non-secretion with a score of 0.059

IPR000039 Ribosomal protein L18e

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	939	Ribosomal_L15 Ribosomal_L18e	20
2	22754	Ribosomal_L15 Ribosomal_L18e	20
5	56899	Ribosomal_L15 Ribosomal_L18e	20
1.1	102256	Ribosomal protein L18e - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	18
2	119262	Ribosomal protein L18e - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	18
5	129606	Ribosomal protein L18e - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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