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Unigene SGN-U205085

Unigene Basic Information

Unigene ID:	SGN-U205085
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205085
mRNA sequence:	Length: 276 bp

>SGN-U205085 Capsicum annuum #1 (1 members)
CTTCGGGAAATCAGGCACTTCCAGAAGACATCGGATCTTGTTGTTCCAGCTGCTCCTTTCATCAGACTTGTTAGAGAAATTAGTCACTTT
TATGCACCGGGGGTTACTCGTTGGCAAGCTGAGGCTTTAATTGCTATTCACGAGGCTGCACAAGATTTTTTACTTCATTTGTTTGAAGAT
GCAATGCTGTGTGCTATTCATGCGAGGCGTGTTACACTCATGAAAAAAGATTTTGAGCTGGCTCGACGACTTGGAGGAAAAGGACAACCT
TGGTGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498428
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 5 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|19338706\|gb\|AAL86777.1\|	136	1.3e-31	70.65	273 bp (98.9%)	1
Description:	gi\|19338706\|gb\|AAL86777.1\| centromeric histone H3 HTR12 [Arabidopsis arenosa]
arabidopsis	blastx	At1g01370.1	135.2	5.5e-33	69.57	273 bp (98.9%)	1
Description:	At1g01370.1 68408.m00044 histone family similar to histone H3 GB:X17141 GI:10795 from Tetrahyme…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003677 DNA binding
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0007001 chromosome organization and biogenesis (sensu Eukaryota)
GO:0006334 nucleosome assembly

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P159222 (91 Aa)

LREIRHFQKTSDLVVPAAPFIRLVREISHFYAPGVTRWQAEALIAIHEAAQDFLLHLFEDAMLCAIHARRVTLMKKDFELARRLGGKGQP
W

SignalP predicts non-secretion with a score of 0.091

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39470 (91 Aa)

SGNQALPEDMDLVVPAAPFIRLVREISHFYAPGVTRWQAEALIAIHEAAQDFLLHLFEDAMLCAIHARRVTLMKKDFELARRLGGKGQLG
X

SignalP predicts non-secretion with a score of 0.061

IPR007124 Histone-fold/TFIID-TAF/NF-Y
IPR000164 Histone H3

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	185	Hist_TAF Histone_H3 Histone_core_D	78
2	22077	Hist_TAF Histone_H3 Histone_core_D	76
5	56332	Hist_TAF Histone_H3 Histone_core_D	75
1.1	101547	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H3 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	77
2	118503	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H3 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	76
5	128991	Histone-fold Histone-fold/TFIID-TAF/NF-Y - Molecular Function: DNA binding (GO:0003677) Histone H3 - Cellular Component: nucleosome (GO:0000786) - Molecular Function: DNA binding (GO:0003677) - Cellular Component: nucleus (GO:0005634) - Biological Process: nucleosome assembly (GO:0006334) - Biological Process: chromosome organization and biogenesis (sensu Eukaryota) (GO:0007001) Histone core - Molecular Function: DNA binding (GO:0003677)	75

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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