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Unigene SGN-U204702

Unigene Basic Information

Unigene ID:	SGN-U204702
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204702
mRNA sequence:	Length: 444 bp

>SGN-U204702 Capsicum annuum #1 (1 members)
TAACCTCTAATCAATCTCCATTTCTCCAATATATACTCTACATAATCCCCAAATTCACAACTGACATACATTTCTCCAATATATACTCTA
CCTAATCCCCAAATTCACAACTGACATAGAGCGTACGCAGGGCTTACTAATGGGCGTCGTAAAAGGAGTAGTAGGTGATTTTGTTATGAC
ATTTATAGTGATATTTAGTACTTCAACAATTGGAATTTTGACTCACATTCTTGGATCTGCATTTGGAATTGGCCAAGGATTAACCTCTCT
GTTCATTACTATGGTGATTGTTCCCGTACTATTTTCGTTGTTTGGGATTATTGGTGATGCTCTGGGTGGTGCTGCATTCCATCCTGCAGG
TACCGCGGCATTTTACGCTGCTGGCGTTGCAAAAGACTCTCTGTACCCTGTTGCAGCTCGATCTCCTGCTCACGCCGCTGGCCG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E504380
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P158836 (127 Aa)

HTFLQYILYLIPKFTTDIERTQGLLMGVVKGVVGDFVMTFIVIFSTSTIGILTHILGSAFGIGQGLTSLFITMVIVPVLFSLFGIIGDAL
GGAAFHPAGTAAFYAAGVAKDSLYPVAARSPAHAAGR

SignalP predicts non-secretion with a score of 0.338

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39100 (148 Aa)

TSNQSPFLQYILYIIPKFTTDIHFSNIYSTLIPKFTTDIERTQGLLMGVVKGVVGDFVMTFIVIFSTSTIGILTHILGSAFGIGQGLTSL
FITMVIVPVLFSLFGIIGDALGGAAFHPAGTAAFYAAGVAKDSLYPVAARSPAHAAGR

SignalP predicts non-secretion with a score of 0.174

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	62	MIP	192
2	24247	MIP	9
5	59725	MIP	6
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199
2	120198	Aquaporin - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	10
5	131373	Aquaporin - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: integral to membrane (GO:0016021) Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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