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Unigene SGN-U204412

Unigene Basic Information

Unigene ID:	SGN-U204412
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204412
mRNA sequence:	Length: 293 bp

>SGN-U204412 Capsicum annuum #1 (1 members)
TGAAGGTTCTACAACATATTAAGACTTTGCCAAAGGTGGAGGGACTTGTCCCAATATACATTAACCCTCAATCTGGACACTTTAGTGGAG
ACAATATTAGACTTGGATCTCGTGGTGATAGCTACTATGAATATCTTATTAAAGTGTGGCTTCAGCAGAAAGGAACTAACTTTTCGTACT
TGTACGATATGTATGTCGAAGCAATTAAAGGTGTCAGGCCACCTTCTTGTCCGCAAATCTACTCCAAATGGCTTGGTCTTTGTGGGAGAA
TTGCCATATGGGAAAGAAGGTGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E512746
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At1g30000 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 4 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|25353895\|pir\|\|H86423	120.9	2.3e-33	77.33	216 bp (73.7%)	3
Description:	gi\|25353895\|pir\|\|H86423 hypothetical protein T1P2.10 - Arabidopsis thaliana gi\|12324174\|gb\|AAG5…
arabidopsis	blastx	At1g30000.1	120.9	5.8e-35	77.33	216 bp (73.7%)	3
Description:	At1g30000.1 68408.m03324 glycoside hydrolase family 47 similar to GI:5579331 from [Homo sapiens]
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0016020 membrane
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 calcium ion binding
GO:0006487 N-linked glycosylation

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38819 (97 Aa)

KVLQHIKTLPKVEGLVPIYINPQSGHFSGDNIRLGSRGDSYYEYLIKVWLQQKGTNFSYLYDMYVEAIKGVRPPSCPKSTPNGLVFVGEL
PYGKEGG

SignalP predicts non-secretion with a score of 0.095

IPR001382 Glycoside hydrolase, family 47

Prediction based on longest six frame method

>SGN-P158539 (97 Aa)

KVLQHIKTLPKVEGLVPIYINPQSGHFSGDNIRLGSRGDSYYEYLIKVWLQQKGTNFSYLYDMYVEAIKGVRPPSCPQIYSKWLGLCGRI
AIWERRW

SignalP predicts non-secretion with a score of 0.095

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158538 (97 Aa)

RFYNILRLCQRWRDLSQYTLTLNLDTLVETILDLDLVVIATMNILLKCGFSRKELTFRTCTICMSKQLKVSGHLLVRKSTPNGLVFVGEL
PYGKEGG

SignalP predicts non-secretion with a score of 0.269

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	813	Glyco_hydro_47	23
2	22662	Glyco_hydro_47	22
5	60142	ANK Glyco_hydro_47	5
1.1	102126	Glycoside hydrolase family 47 - Molecular Function: mannosyl-oligosaccharide 1 2-alpha-mannosidase activity (GO:0004571) - Molecular Function: calcium ion binding (GO:0005509) - Biological Process: protein amino acid N-linked glycosylation (GO:0006487) - Cellular Component: membrane (GO:0016020)	21
2	119310	Glycoside hydrolase family 47 - Molecular Function: mannosyl-oligosaccharide 1 2-alpha-mannosidase activity (GO:0004571) - Molecular Function: calcium ion binding (GO:0005509) - Biological Process: protein amino acid N-linked glycosylation (GO:0006487) - Cellular Component: membrane (GO:0016020)	17
5	133245	Glycoside hydrolase family 47 - Molecular Function: mannosyl-oligosaccharide 1 2-alpha-mannosidase activity (GO:0004571) - Molecular Function: calcium ion binding (GO:0005509) - Biological Process: protein amino acid N-linked glycosylation (GO:0006487) - Cellular Component: membrane (GO:0016020) Ankyrin	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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