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Unigene SGN-U204299

Unigene Basic Information

Unigene ID:	SGN-U204299
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204299
mRNA sequence:	Length: 460 bp

>SGN-U204299 Capsicum annuum #1 (1 members)
GGACCAGTTGCATACAGAGATGGGAGTTGGGAATGTCTTCCAAGGAATGCGTGAAGCAGTCATCAGATTTCCTCCAACATACAAATTTGA
GAGACATCAAATTGGCTTAGCAGGGTATGACTCTGGTGAAAAGAAGCGGATTCCTGCCTGGTGTGACAGAATTTTGTATCGTGATAGCCG
TTCCACTTCATCTGCCACATGCAGCTTAGATTGTCCTGTCGTCTCATTACTTCTGCAGTATGAAGCTTGCCTGGACGTGACTGATAGTGA
CCACAAGCCTGTAAGGTGCATATTCAATGTGGAGATTGCTCGAGTGGATGAATCAGTGAGAAGGCAAGAATATGGAGAAATCATTACATC
AAATGAGAAAGTTGTGCATATGCTTCGGGAACTTACTAGAATTCCAGAACCAATAGTCACCACAAATAACATAATCCTCCAGAACCCAGA
TTCTTCCATC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E513695
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|4688596\|emb\|CAB41466.1\|	252.7	1.2e-66	77.12	459 bp (99.8%)	2
Description:	gi\|4688596\|emb\|CAB41466.1\| inositol 1,4,5-trisphosphate 5-phosphatase [Arabidopsis thaliana]
arabidopsis	blastx	At1g65580.1	252.7	5.6e-68	77.12	459 bp (99.8%)	2
Description:	At1g65580.1 68408.m06818 hypothetical protein similar to putative inositol polyphosphate 5'-pho…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38707 (153 Aa)

DQLHTEMGVGNVFQGMREAVIRFPPTYKFERHQIGLAGYDSGEKKRIPAWCDRILYRDSRSTSSATCSLDCPVVSLLLQYEACLDVTDSD
HKPVRCIFNVEIARVDESVRRQEYGEIITSNEKVVHMLRELTRIPEPIVTTNNIILQNPDSSI

SignalP predicts non-secretion with a score of 0.035

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158424 (153 Aa)

DQLHTEMGVGNVFQGMREAVIRFPPTYKFERHQIGLAGYDSGEKKRIPAWCDRILYRDSRSTSSATCSLDCPVVSLLLQYEACLDVTDSD
HKPVRCIFNVEIARVDESVRRQEYGEIITSNEKVVHMLRELTRIPEPIVTTNNIILQNPDSSI

SignalP predicts non-secretion with a score of 0.035

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	309	Exo_endo_phos	51
2	26447	WD40 Exo_endo_phos	5
5	60451	WD40 Exo_endo_phos	5
1.1	101698	Inositol polyphosphate related phosphatase - Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Endonuclease/exonuclease/phosphatase	45
2	122023	WD-40 repeat Inositol polyphosphate related phosphatase - Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Endonuclease/exonuclease/phosphatase	5
5	132233	WD-40 repeat Inositol polyphosphate related phosphatase - Molecular Function: inositol or phosphatidylinositol phosphatase activity (GO:0004437) Endonuclease/exonuclease/phosphatase	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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