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Unigene SGN-U204205

Unigene Basic Information

Unigene ID:	SGN-U204205
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	204205
mRNA sequence:	Length: 211 bp

>SGN-U204205 Capsicum annuum #1 (1 members)
CTAAAGGTGAAACCTTTGAAGAAATAGTGGGATTGGCAAGGGCAATGATAAAGCATTGCAGACAAGTTGAAGGCTTAGGCGACGCAGTTG
ATATTGTTGGGACAGGAGGGGATGGAGCAAACACGGTGAATATTTCAACAGGTGCTTCAATACTTGCTGCCGCTTGTGGTGCAAAAGTAG
CCAAGCAAGGGAGTAGATCCAGTTCATCCGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E501239
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15238711\|ref\|NP_197300.1\|	123.2	9.2e-28	89.86	207 bp (98.1%)	3
Description:	TRP1 (tryptophan biosynthesis 1); anthranilate phosphoribosyltransferase [Arabidopsis thaliana]…
arabidopsis	blastx	At5g17990.1	123.2	2.3e-29	89.86	207 bp (98.1%)	3
Description:	At5g17990.1 68412.m01945 anthranilate phosphoribosyltransferase identical to anthranilate phosp…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0006206 pyrimidine base metabolism

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38615 (70 Aa)

KGETFEEIVGLARAMIKHCRQVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSA

SignalP predicts non-secretion with a score of 0.066

IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase

Prediction based on longest six frame method

>SGN-P158328 (70 Aa)

KGETFEEIVGLARAMIKHCRQVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSA

SignalP predicts non-secretion with a score of 0.066

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P158329 (70 Aa)

ADELDLLPCLATFAPQAAASIEAPVEIFTVFAPSPPVPTISTASPKPSTCLQCFIIALANPTISSKVSPL

SignalP predicts non-secretion with a score of 0.196

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2028	Ant_phspho_trans Glyco_trans_3 Thymid_phosphls	9
2	24518	Ant_phspho_trans Glyco_trans_3 Thymid_phosphls	8
5	58938	Ant_phspho_trans Glyco_trans_3 Thymid_phosphls	7
1.1	103145	Anthranilate phosphoribosyl transferase - Biological Process: tryptophan biosynthesis (GO:0000162) - Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048) Glycosyl transferase family 3 - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity transferring glycosyl groups (GO:0016757)	8
2	120831	Anthranilate phosphoribosyl transferase - Biological Process: tryptophan biosynthesis (GO:0000162) - Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048) Glycosyl transferase family 3 - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity transferring glycosyl groups (GO:0016757)	8
5	131516	Anthranilate phosphoribosyl transferase - Biological Process: tryptophan biosynthesis (GO:0000162) - Molecular Function: anthranilate phosphoribosyltransferase activity (GO:0004048) Glycosyl transferase family 3 - Biological Process: metabolism (GO:0008152) - Molecular Function: transferase activity transferring glycosyl groups (GO:0016757)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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