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Unigene SGN-U203752

Unigene Basic Information

Unigene ID:	SGN-U203752
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203752
mRNA sequence:	Length: 459 bp

>SGN-U203752 Capsicum annuum #1 (1 members)
GCCAGATGTCTTGAAGGAATGGGCATCATCTGAGGGAATCAAGTATGAAGATTTGGGACAACTTTGCAATGATCCAAGAGCAAGGGCGGC
AGTTCTTGCTGAGATGGATGCTGTCGGAAGGGATGCTCAGTTGAGAGGTTTTGAATTTGTAAAAGCTGTAACATTGACTATCGAGCCTTT
CACAATCGAAAATGGTCTTCTTACTCCCACGTCCAAGGTTAAGAGACCGCAGGCGAAGGCTTATTTCGCCAAAGCTATATCTGATATGTA
TAATGAGCTTTCTACATCAGATCCAGCATCCCAGAAAGCACTATGACCTTAAAAAAAAAAAGCAACCGACAAGGCTTCACCTGTCCACCC
CTACTTTCCATTCTTCGAAATAAATACCAACCAAATGATTATTGTAGAATAGAAAAGAAAGCTCACAGGATTTATTGAGTCTCGAGTTAA
TAGATTTCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508053
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|22327099\|ref\|NP_198112.2\|	158.3	3.2e-38	73.53	306 bp (66.7%)	2
Description:	LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7); long-chain-fatty-acid-CoA ligase/ protein binding [Ar…
arabidopsis	blastx	At5g27600.1	158.3	1.4e-39	73.53	306 bp (66.7%)	2
Description:	At5g27600.1 68412.m03011 AMP-binding protein, putative similar to AMP-binding protein (MF39P) g…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P157860 (104 Aa)

PDVLKEWASSEGIKYEDLGQLCNDPRARAAVLAEMDAVGRDAQLRGFEFVKAVTLTIEPFTIENGLLTPTSKVKRPQAKAYFAKAISDMY
NELSTSDPASQKAL

SignalP predicts non-secretion with a score of 0.037

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38178 (104 Aa)

PDVLKEWASSEGIKYEDLGQLCNDPRARAAVLAEMDAVGRDAQLRGFEFVKAVTLTIEPFTIENGLLTPTSKVKRPQAKAYFAKAISDMY
NELSTSDPASQKAL

SignalP predicts non-secretion with a score of 0.037

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	51	AMP-bind	230
2	22134	AMP-bind	57
5	56529	AMP-bind	33
1.1	101420	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	214
2	118584	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	49
5	130167	AMP-dependent synthetase and ligase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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