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Unigene SGN-U203639

Unigene Basic Information

Unigene ID:	SGN-U203639
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	203639
mRNA sequence:	Length: 394 bp

>SGN-U203639 Capsicum annuum #1 (1 members)
AGGTGACATGCTATACTTCCATTCTTTCAAAAAGGGAGATCCAGATAATCCAGATCTTAATCCTGGTCTAATCATTGACATTGTGGGAGA
TATCAGGGCAATGAATGGTGAAGCTGTTCATGCTGGCTCAAGAAAGACAGGAATGATTATACTGGGTGGAGGGCTTCCTAAGCATCATGT
TTGCAATGCCAATATGATGCGCAATGGTGCAGATTTTGCGGTCTACATCAACACGGCACAAGAGTTTGATGGTAGTGATTCTGGTGCTCA
TCCTGATGAAGCTGTATCATGGGGAAAAATACGTGGTGGTGCCAAGACCGTGAAGGTACACTGTGATGCAACAATTGCATTTCCCATATT
AGTAGCTGAGACATTTGCAGCTAAGAGAAAGGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505351
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g05920 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|6523417\|emb\|CAB62400.1\|	268.5	1.4e-71	98.47	393 bp (99.7%)	2
Description:	gi\|6523417\|emb\|CAB62400.1\| deoxyhypusine synthase [Nicotiana tabacum]
arabidopsis	blastx	At5g05920.1	212.2	5.8e-56	78.63	393 bp (99.7%)	2
Description:	At5g05920.1 68412.m00608 deoxyhypusine synthase
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0008612 hypusine biosynthesis from peptidyl-lysine

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P38065 (131 Aa)

GDMLYFHSFKKGDPDNPDLNPGLIIDIVGDIRAMNGEAVHAGSRKTGMIILGGGLPKHHVCNANMMRNGADFAVYINTAQEFDGSDSGAH
PDEAVSWGKIRGGAKTVKVHCDATIAFPILVAETFAAKRKE

SignalP predicts non-secretion with a score of 0.045

IPR002773 Deoxyhypusine synthase

Prediction based on longest six frame method

>SGN-P157746 (131 Aa)

GDMLYFHSFKKGDPDNPDLNPGLIIDIVGDIRAMNGEAVHAGSRKTGMIILGGGLPKHHVCNANMMRNGADFAVYINTAQEFDGSDSGAH
PDEAVSWGKIRGGAKTVKVHCDATIAFPILVAETFAAKRKE

SignalP predicts non-secretion with a score of 0.045

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2284	Deoxyhypus_synth	8
2	24961	Deoxyhypus_synth	7
5	59540	Deoxyhypus_synth	6
1.1	103354	Deoxyhypusine synthase - Biological Process: hypusine biosynthesis from peptidyl-lysine (GO:0008612)	7
2	121846	Deoxyhypusine synthase - Biological Process: hypusine biosynthesis from peptidyl-lysine (GO:0008612)	6
5	132055	Deoxyhypusine synthase - Biological Process: hypusine biosynthesis from peptidyl-lysine (GO:0008612)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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