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Unigene SGN-U202427

Unigene Basic Information

Unigene ID:	SGN-U202427
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202427
mRNA sequence:	Length: 405 bp

>SGN-U202427 Capsicum annuum #1 (1 members)
GAGAAAACCATTCGCCCCAGTTTAGTAGAGCTAGCTGAAGACCCTGATGTCGATGTTCGCTTTTATGCCAATCAAGCACTTCAGTCAATC
GATAATGTGATGATGTCAGGCTAGAGAAGCTAATAGTACAAATCTCTCTTCTAATCCCTCTTTGGTAGTCTTGGATAACGCTCTCACATG
GAGAAGCAAAAGGGAAAGAGGTACGATGTAAAATTCGCCGTATTGAGCTTGGAGTCGTATATTGTTACTAATTCTTTTGTAGGATTGGGC
ATTCAAAGATGCTGCGACACTAATGAAGACCCGAGTGTTCTTTCATGTAAAGTTAATGCCATACTTTACTATTTGGATCTACTTAGCTCA
AATTGTATTCGATTTGTTCGTGTACTTTTGATGTCTGAACTTGCA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505343
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|7447393\|pir\|\|T03684	73.94	4.9e-13	97.3	111 bp (27.4%)	1
Description:	gi\|7447393\|pir\|\|T03684 phosphoprotein phosphatase (EC 3.1.3.16) 2A regulatory chain - common to…
arabidopsis	blastx	At3g25800.1	68.94	8.5e-13	91.67	108 bp (26.7%)	1
Description:	At3g25800.1 68410.m02939 serine/threonine protein phosphatase 2A, 65 KDa regulatory subunit A i…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36894 (135 Aa)

EKTIRPSLVELAEDPDVDVRFYANQALQSIDNVMMSAREANSTNLSSNPSLVVLDNALXMEKQKGKRYDVKFAVLSLESYIVTNSFVGLG
IQRCCDTNEDPSVLSCKVNAILYYLDLLSSNCIRFVRVLLMSELA

SignalP predicts non-secretion with a score of 0.023

IPR000357 HEAT

Prediction based on longest six frame method

>SGN-P156506 (81 Aa)

QYTTPSSIRRILHRTSFPFASPCESVIQDYQRGIRREICTISFSSLTSSHYRLTEVLDWHKSEHRHQGLQLALLNWGEWFS

SignalP predicts non-secretion with a score of 0.125

No InterPro domain matches or not analyzed.

Gene Family (5)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	718	PBS_lyase_HEAT HEAT	26
2	22692	PBS_lyase_HEAT HEAT	21
5	75791		1
1.1	101812	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	35
2	119295	Armadillo-like helical - Molecular Function: binding (GO:0005488) HEAT	17

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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