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Unigene SGN-U202055

Unigene Basic Information

Unigene ID:	SGN-U202055
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202055
mRNA sequence:	Length: 450 bp

>SGN-U202055 Capsicum annuum #1 (1 members)
TTGGACATGACAATTGAGATGATGTCTGAATCCATTGACGAGACTTTGGATAAAGATGAAGCTGAAGAAGAAACTGAGGAGCTTACAAAC
CAGGTGCTGGACGAGATTGGTGTTGACATTGCATCGCAGTTATCTTCAGCTCCAAAAGGTCGGATTGCATCGAAGAAAGTTGAAAATGTT
ACGCCCGCTAGTTCTGACACTGCTGCAGACGTTGAGGAACTTGAGAAAAGGTTGGCCTCTCTTCGAAGAATTTGATGAAGAACGTGCATA
TTTGTGGACAACTTTTATATGTGATCATTGTATAAATTGGCTTTAGAATTATAAATATAGTATGTACCATGACACAAATTTGTATTTCTC
AACTATTTTTTCTATAGCACCAAACATCAACATTTATGCTGTGAGAATGAAATGGGATCCTCTTTGGGTTAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E497690
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g44560 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15241525\|ref\|NP_199269.1\|	81.26	2.9e-15	73.33	252 bp (56.0%)	1
Description:	VPS2.2 [Arabidopsis thaliana] >gi226698193\|sp\|Q0WTY4.2\|VPS2B_ARATH RecName: Full=Vacuolar prote…
arabidopsis	blastx	At5g44560.1	81.26	2.1e-16	73.33	252 bp (56.0%)	1
Description:	At5g44560.1 68412.m04921 expressed protein similar to unknown protein (gb\|AAD10675.1)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36538 (84 Aa)

LDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASKKVENVTPASSDTAADVEELEKRLASLRRI

SignalP predicts non-secretion with a score of 0.021

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P156125 (97 Aa)

CLNPLTRLWIKMKLKKKLRSLQTRCWTRLVLTLHRSYLQLQKVGLHRRKLKMLRPLVLTLLQTLRNLRKGWPLFEEFDEERAYLWTTFIC
DHCINWL

SignalP predicts non-secretion with a score of 0.214

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	222	Snf7	68
2	22823	Snf7	19
5	58674	Snf7	8
1.1	101608	Snf7 - Molecular Function: molecular function unknown (GO:0005554)	60
2	119759	Snf7 - Molecular Function: molecular function unknown (GO:0005554)	12
5	130085	Snf7 - Molecular Function: molecular function unknown (GO:0005554)	12

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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