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Unigene SGN-U201160

Unigene Basic Information

Unigene ID:	SGN-U201160
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201160
mRNA sequence:	Length: 387 bp

>SGN-U201160 Capsicum annuum #1 (1 members)
CCTACAGAGAGGTGCTTCACTGCCTGTGACACTTGAAGTTCTTGAATATGAAGTATTCCACTTTTCTCCTGTCAAGAAAGTTGTGACCAA
CATCTCTTTCGCTCCAATTGGGCTGCTGGATATGATCAACAGTGGTGGTGCCATTGATCAATATGAAGTTCATCTAGCTTTTGAGAAGAA
AGCCCACAACTTCGATGACAGAAGCCATTCTCCGATTGCAACAGTCTCACTGAAGGTCAGGGGATGTGGCCGCTTTGGCGTTTACATCTC
CCATCGACCCCTGAAATGTTCAATAGATGATGCAGACACCTTCTTTAACTACAAAAATGAATCTGGACTGCTGACTATGAATATCCCAGT
TCCACAAGAAGAAATGTACAGATGGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E511097
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|629602\|pir\|\|S45033	152.1	1.5e-36	53.79	384 bp (99.2%)	2
Description:	gi\|629602\|pir\|\|S45033 probable imbibition protein - wild cabbage gi\|488787\|emb\|CAA55893.1\| puta…
arabidopsis	blastx	At3g57520.1	150.2	2.6e-37	51.45	384 bp (99.2%)	2
Description:	At3g57520.1 68410.m05916 glycosyl hydrolase family 36 similar to seed imbibition protein GB:AAA…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155210 (128 Aa)

LQRGASLPVTLEVLEYEVFHFSPVKKVVTNISFAPIGLLDMINSGGAIDQYEVHLAFEKKAHNFDDRSHSPIATVSLKVRGCGRFGVYIS
HRPLKCSIDDADTFFNYKNESGLLTMNIPVPQEEMYRW

SignalP predicts non-secretion with a score of 0.109

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35677 (129 Aa)

LQRGASLPVTLEVLEYEVFHFSPVKKVVTNISFAPIGLLDMINSGGAIDQYEVHLAFEKKAHNFDXQKPFSDCNSLTEGQGMWPLWRLHL
PSTPEMFNDDADTFFNYKNESGLLTMNIPVPQEEMYRWX

SignalP predicts non-secretion with a score of 0.109

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	428	Raffinose_synth	40
2	22260	Raffinose_synth	39
5	56538	Raffinose_synth	33
1.1	101847	Raffinose synthase	33
2	118802	Raffinose synthase	29
5	129322	Raffinose synthase	25

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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