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Unigene SGN-U200004

Unigene Basic Information

Unigene ID:	SGN-U200004
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200004
mRNA sequence:	Length: 455 bp

>SGN-U200004 Capsicum annuum #1 (1 members)
AGTTGCTTATTTGGTAGGAATTGGGGTGGCAAGAAGAGAAATTGGTGGGCTTCTGACTAGATATCCTGAGATACTAGGGATGCGGGTAGG
TCGGGTAATTAAACCATTTGTAGAGTATCTGGAATCCTTGGGAATCCCGAAGCTAGCTGTTGCCAGATTGATTGAGAAGCATCCTCACAT
TCTTGGGTTTGGACTACAAGAAAGGGTAAAACCAAACATTAAATCCCTTTTACAGTTTCATTTGAGAGAAACTGCACTTCCTTCAGTAAT
TGCACAATATCCTGAGATCTTAGGAATCGACATGGAGGCTAAGATTCCAAGTCAACAAGAGTTTCTCAATTCAATAATTGAATCTACTTG
TGAAGATTTTGGGCGAGTTGTTGAACACATGCCCCAGATTATTACGCTCAGTAACGCACCAGTAGTGAACCATGTTGATTTCCTTAAAGA
ATGTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505431
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15236230\|ref\|NP_192208.1\|	206.8	7.6e-53	64.9	453 bp (99.6%)	2
Description:	mitochondrial transcription termination factor family protein / mTERF family protein [Arabidops…
arabidopsis	blastx	At4g02990.1	206.8	3.5e-54	64.9	453 bp (99.6%)	2
Description:	At4g02990.1 68411.m00368 expressed protein similar to A. thaliana hypothetical protein F6E13.15…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154027 (151 Aa)

VAYLVGIGVARREIGGLLTRYPEILGMRVGRVIKPFVEYLESLGIPKLAVARLIEKHPHILGFGLQERVKPNIKSLLQFHLRETALPSVI
AQYPEILGIDMEAKIPSQQEFLNSIIESTCEDFGRVVEHMPQIITLSNAPVVNHVDFLKEC

SignalP predicts non-secretion with a score of 0.148

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34552 (152 Aa)

VAYLVGIGVARREIGGLLTRYPEILGMRVGRVIKPFVEYLESLGIPKLAVARLIEKHPHILGFGLQERVKPNIKSLLQFHLRETALPSVI
AQYPEILGIDMEAKIPSQQEFLNSIIESTCEDFGRVVEHMPQIITLSNAPVVNHVDFLKECX

SignalP predicts non-secretion with a score of 0.148

IPR003690 Mitochodrial transcription termination factor-related

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	142	mTERF	94
2	24617	mTERF	8
5	59069	mTERF	7
1.1	101517	Mitochodrial transcription termination factor-related	90
2	120181	Mitochodrial transcription termination factor-related	10
5	130974	Mitochodrial transcription termination factor-related	8

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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