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Unigene SGN-U199824

Unigene Basic Information

Unigene ID:	SGN-U199824
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199824
mRNA sequence:	Length: 461 bp

>SGN-U199824 Capsicum annuum #1 (1 members)
TCGAGTTTTTTTTTTTTTTTTTTTTTAATTATGAAATGTAACATATTCAATGTAATTCAGAAACATTGTTTTTCATGACAATTTTTTAAA
AACTGAGTATCAACAATTACACATTCACAATAATTATGAAATGCAATTTAACTACAAAAATAAAAATCCTAAAATAAAACATCTTCAATG
TAACTTAACTTTATATATAAAAAAATGAAAAGAACACATACATTTTTCTTTTGAGTTTGTTACTAATCTTTCTTGTGTGACAGTTTTCTC
AAACTCTTTGCGCATTGGATGTTTTAGTTATTAGTCTTCACGAGAAGGACACCATGGAGTCATATCCATAGGATAACTTGCCAAAACTCT
GAAAAACGACGTGAATTCCTGTACTTCAGCTAATGCATTTTGTGCTATAACATCTGCCATGGACGCCTCGAAATCAACGTAAAACATGTA
TTGGAAATGCT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E492151
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18390869\|ref\|NP_563809.1\|	90.12	1.1e-17	83.67	147 bp (31.9%)	-3
Description:	ADT6 (arogenate dehydratase 6); arogenate dehydratase/ prephenate dehydratase [Arabidopsis thal…
arabidopsis	blastx	At1g08250.1	90.12	4.9e-19	83.67	147 bp (31.9%)	-3
Description:	At1g08250.1 68408.m00819 prephenate dehydratase family contains similarity to prephenate dehydr…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34379 (52 Aa)

HFQYMFYVDFEASMADVIAQNALAEVQEFTSFFRVLASYPMDMTPWCPSRED

SignalP predicts non-secretion with a score of 0.11

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153839 (52 Aa)

HFQYMFYVDFEASMADVIAQNALAEVQEFTSFFRVLASYPMDMTPWCPSRED

SignalP predicts non-secretion with a score of 0.11

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	675	ACT Preph_dehydrtase	28
2	22478	ACT Preph_dehydrtase	28
5	56667	ACT Preph_dehydrtase	27
1.1	101991	Prephenate dehydratase - Molecular Function: prephenate dehydratase activity (GO:0004664) - Biological Process: L-phenylalanine biosynthesis (GO:0009094)	25
2	118913	Prephenate dehydratase - Molecular Function: prephenate dehydratase activity (GO:0004664) - Biological Process: L-phenylalanine biosynthesis (GO:0009094)	25
5	129339	Prephenate dehydratase - Molecular Function: prephenate dehydratase activity (GO:0004664) - Biological Process: L-phenylalanine biosynthesis (GO:0009094)	24

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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