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Unigene SGN-U199278

Unigene Basic Information

Unigene ID:	SGN-U199278
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	199278
mRNA sequence:	Length: 350 bp

>SGN-U199278 Capsicum annuum #1 (1 members)
AGTGAAGGCAATGAAGCACATTCTTGCAAAACCAATCGGGGCCTACGGAAATGGAGGAAAGAAGAGCAGTTCTTGAAATTCTACGAAGCA
CTAATACTATGGAATGAGGTAAAATAGCAGGCTAACGGAGGATGTTAAAAGAATGCTGGTGCTTGGCTTGACAACCTCGTTGGTGCATTG
ATTACCAGACCTCATTTCCAGCATAAACAAGATTACAATGTTGATTAATGATGTGTATATATTGCTACTGTATTGATCGCGCTGCAACCA
GAACATGATTAAAGAAGGATCATTGTCATACGTTGTCTAATCATCATGTACATAATCCTAGTTCCTTATTATGATGGCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AY491402	cysteine protease	cysteine protease

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506873
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P40257 (75 Aa)

SEGNEAHSCKTNRGLRKWRKEEQFLKFYEALILWNEENSRLTEDVKRXAGAWLDNLVGALITRPHFQHKQDYNVD

SignalP predicts non-secretion with a score of 0.041

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P153279 (69 Aa)

TTYDNDPSLIMFWLQRDQYSSNIYTSLINIVILFMLEMRSGNQCTNEVVKPSTSILLTSSVSLLFYLIP

SignalP predicts non-secretion with a score of 0.196

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	5305		2
2	29787		2
5	64453		2
1.1	101448	Peptidase C1A papain	149
2	126816		2
5	137794		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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