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Unigene SGN-U198959

Unigene Basic Information

Unigene ID:	SGN-U198959
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	198959
mRNA sequence:	Length: 414 bp

>SGN-U198959 Capsicum annuum #1 (1 members)
GCAAAGCCTGCCAATAAGGTTATTGTCTACGCCACTGAGGAGGCAGCACCTGAGAGAGTTGAGGCTTGATTTGTTAGATGTTATGCTCCG
CTGTTTTGTTCTTGTAGTTTTCTTATATGAGATGTTAGTATTCTAAATTTTGTTTTCTGTTCTGATGGATGTTTTCTTTACACTTGCAAA
AGCTAATGTTTCCTTTTTGTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAAACAGTCTCAAAATATTCTTCTTA
CTAAAATGAGTCACTTGACAACTTGTTTAGTGTTCTTCCTCCTTGCCTTTGTGATTTACACTTATGCATCTGGTGTATTTGAGGTCCACA
ACAACTGCCCTTACACCGTATGGGCCGCACCAACCCCGGTGGGTGGTGGCAAAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
pr5	PR5-like protein

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E508636
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|31095603\|gb\|AAP43673.1\|	96.67	7e-20	93.48	138 bp (33.3%)	3
Description:	PR5-like protein [Solanum lycopersicum] >gi270303595\|gb\|ACZ71038.1\| PR5-like protein [Solanum l…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0042831 defense response to pathogenic fungi

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39960 (47 Aa)

MSHLTTCLVFFLLAFVIYTYASGVFEVHNNCPYTVWAAPTPVGGGKX

SignalP predicts secretion with a score of 0.888

IPR001938 Thaumatin, pathogenesis-related

Prediction based on longest six frame method

>SGN-P152947 (86 Aa)

WMFSLHLQKLMFPFCSFKKKKKKKKKKKKLKQSQNILLTKMSHLTTCLVFFLLAFVIYTYASGVFEVHNNCPYTVWAAPTPVGGGK

SignalP predicts non-secretion with a score of 0.265

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	156	Thaumatin	87
2	22062	Thaumatin	86
5	56693	Furin-like Thaumatin	25
1.1	101535	Thaumatin pathogenesis-related	83
2	118496	Thaumatin pathogenesis-related	80
5	129388	Thaumatin pathogenesis-related	23

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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