Sol Genomics Network

Unigene SGN-U196245

Unigene Basic Information

Unigene ID:	SGN-U196245
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	196245
mRNA sequence:	Length: 1739 bp

>SGN-U196245 Capsicum annuum #1 (16 members)
CTTGCTGCATCTCTTGCCCTCCTGCAATCTCTTGAGGGCGTTGTGGGAAAAGACAAGCTTGTTGTCTCTACATCATGCTCCTTACTCCAC
ACCGCTGTTGATCTGATCAACGAGACCAAATTAGATGATGAAATCAAATCATGGCTGGCATTTGCTGCCCAAAAGGTTGTTGAAGTTAAT
GCTTTGGCCAAGGCATTGTCTGGTGCCAAGGATGAGGCATTTTTCTCTGCCAATGCTGCTGCTCAAGCTTCCAGGAAGTCCTCCCCAAGA
GTGACAAATGAAGCTGTTCAAAAGGCTTCTGCTGCTCTTCAAGGATCTGACCACCGCCGTGCTACCAATGTTAGTGCTAGACTCGATGCC
CAACAAAAGAAGCTTAACTTACCAATTTTGCCTACAACCACCATTGGATCCTTCCCTCAAACAGTTGAGCTTAGAAGAGTTCGCCGTGAA
TACAAGGCCAAGAAGATCTCTGAGGAGGAGTATGTTGCAGCTATCACTGAGGAAATCAAGAAGGTTGTCGAACTCCAGGAAGATCTTGAC
ATTGATGTCTTGGTTCACGGAGAGCCTGAGAGGAACGATATGGTTGAGTACTTCGGAGAGCAGCTATCTGGTTTTGCTTTCACTGCCAAT
GGGTGGGTTCAATCTTATGGATCTCGATGTGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCCAAGGCAATGACTGTCTTCTGG
TCCTCAAAAGCTCAAAGCATGACCAAGAGGCCAATGAAGGGAATGCTTACCGGCCCTGTCACCATTCTCAACTGGTCTTTTGTCAGAAAT
GACCAGCCAAGGTTTGAGACCTGCTACCAGATTGCTTTGGCCATTAAGGATGAAGTGGAGGATTTGGAGAAGGCTGGCATCACCGTGATC
CAAATCGATGAAGCTGCTTTGAGAGAGGGTTTGCCTTTGAGGAAATCTGAACATGCATTCTACTTGAACTGGGCTGTCCACTCCTTCAGA
ATCACCAACGTCGGCATCCAGGACACCACACAGATCCACACCCACATGTGCTACTCCAACTTCAACGATATCATCCACTCCATCATCGAC
ATGGATGCTGATGTGATCACCATTGAGAACTCACGTTCCGATGAGAAGCTCCTCTCCGTTTTCAGGGAGGGAGTGAAATACGGAGCTGGC
ATTGGACCTGGTGTCTACGATATCCACTCTCCTAGAATACCATCTGCCGAAGAGATTGCTGACAGAGTTAACAAGATGCTTGCAGTTCTT
GACACCAACATCTTGTGGGTCAACCCCGACTGTGGTCTCAAGACTCGTAAGTACACTGAGGTGAAGCCAGCATTGCAAAACATGGTGTCC
GCAGCCAAGGCCATCCGCACTCAACTCGCCAGCGCCAAGTGAGTTGAATTGATCAACTGGAGGAGGATTCTTGAATCAACTATGCCCATA
GTGGTGTTACTTTGAACTCGAATGAGAAATTTCTTTGTTGATTTTAATAATTTGTACTGGTGATGAAATATTATTGTGTAGATTAGTCTG
CCCTCTGGGCCATTTGCTGATTTTTTTTTTTTTTTTTTTTGTTTGAGCTTTTTTCATGTTGGTTTTCGGATTTTCTTATTACCAATACAA
CAGCAAGCGGATTGGTGGTATTCTTTGGAGAAGAAATCGGAGAAATATTAGTCCGTTTATGCTAANNNAAAAAAAAAAAAAAAAAAAAAA
NNAAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (6)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1
Capsicum annuum	KS07	Flower bud	4235	3
Capsicum annuum	KS09	Young fruit (0.5-2 cm)	4055	3
Capsicum annuum	KS10	Hairy root	2179	3
Capsicum annuum	KS11	Early root	2168	5
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (16)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	862	Met_syn_B12ind Methionine_synth	22
2	22675	Met_syn_B12ind Methionine_synth	22
5	56867	Met_syn_B12ind Methionine_synth	21
1.1	102007	Methionine synthase vitamin-B12 independent - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086) Cobalamin-independent synthase MetE N-terminal Prismane-like 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086)	25
2	118935	Cobalamin-independent synthase MetE N-terminal Prismane-like 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086) Methionine synthase vitamin-B12 independent - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086)	25
5	129356	Cobalamin-independent synthase MetE N-terminal Prismane-like 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086) Methionine synthase vitamin-B12 independent - Molecular Function: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity (GO:0003871) - Biological Process: methionine biosynthesis (GO:0009086)	24

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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