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Unigene SGN-U590894

Unigene Basic Information

Unigene ID:	SGN-U590894
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 298 bp

>SGN-U590894 Tomato 200607 #2 (1 members)
GAATAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAGGTTAACATCAGAGGATTCTCTGAATTCTCTGGCTTGAGAACCTCATCATC
TGTTCCATTGGTGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACGAACCTCTGCTATTGGAGGAAGGAAGAACAAGAGGAT
AGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACTTTTGGAAGTGCTGGCATGGCAGAAAAGACTC
ATCTCTTGGATGTCATTGCCATCAATGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E280126
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|120661\|sp\|P09043\|G3PA_TOBAC	119	6e-26	73.42	237 bp (79.5%)	2
Description:	gi\|120661\|sp\|P09043\|G3PA_TOBAC Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precurso…
arabidopsis	blastx	At1G12900.1	92	7e-20	58.75	234 bp (78.5%)	2
Description:	Symbols: GAPA-2 \| GAPA-2; glyceraldehyde-3-phosphate dehydrogenase \| chr1:4392632-4394281 REVERSE
swissprot	blastx	P09043	119	3e-27	73.42	237 bp (79.5%)	2
Description:	Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GA…

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P681551 (98 Aa)

MAALSVANTSLXVNIRGFSEFSGLRTSSSVPLVRKTNDDLFSVAGLRTSAIGGRKNKRIVTEAKLKVAINGFGRIEGTFGSAGMAEKTHL
LDVIAINX

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P722621 (85 Aa)

VNIRGFSEFSGLRTSSSVPLVRKTNDDLFSVAGLRTSAIGGRKNKRIVTEAKLKVAINGFGRIGRNFWKCWHGRKDSSLGCHCHQ

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U312461	Tomato 200607 #1

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