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Unigene SGN-U588509

Unigene Basic Information

Unigene ID:	SGN-U588509
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 179 bp

>SGN-U588509 Tomato 200607 #2 (1 members)
GGGGAACTGAAGGACATTCACGCTGTGTTTATACCTGTAGGTGGTGGGGGTTTGATAGCTGGTGAAGCTACCTTTTTCAAACAAATTGCC
CCAAATACAAAAATTATTGGAGTTGAGCCATATGGTGCACCTTCAATGACAGAAAGATTGCATGAAGGACAAATAGTGAAATTGTCAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
td	threonine deaminase	threonine deaminase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E324123
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|135721\|sp\|P25306\|THD1_SOLLC	102	1e-20	87.93	174 bp (97.2%)	1
Description:	RecName:
arabidopsis	blastx	At3G10050.1	65.1	9e-12	56.6	159 bp (88.8%)	1
Description:	Symbols: OMR1 \| OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase \| chr3:3099169…
swissprot	blastx	P25306	102	7e-22	87.93	174 bp (97.2%)	1
Description:	Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P679317 (60 Aa)

GELKDIHAVFIPVGGGGLIAGEATFFKQIAPNTKIIGVEPYGAPSMTERLHEGQIVKLSX

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P720148 (59 Aa)

GELKDIHAVFIPVGGGGLIAGEATFFKQIAPNTKIIGVEPYGAPSMTERLHEGQIVKLS

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U312574	Tomato 200607 #1

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