Sol Genomics Network

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Unigene SGN-U581131

Unigene Basic Information

Unigene ID:	SGN-U581131
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2281 bp

>SGN-U581131 Tomato 200607 #2 (214 members)
AGCCCGAGGGTTGTTGCTATTTTTTAAAAAATATTTGTTTTTAAAATGTGTAATTTTTAGTGGCATGCTCTAAAAAAAAATAAAATTATC
TGAGCATCAGTTTTGGTTATGCAATTTCCTTCCCTATAAATGGCCCTCCATATCTCAAATGAGATATCAAACAATTTGCAGAAGTAGTAG
TATTAACATTTAGAAGATAACTTTGTTTCCCAGATTGATTGTCAATGGCGGATCTTCTCTCGAACTGGTCAAGCACATTAGAAGCAGTTC
CTAAAAGTCATTGCATCCCAGAGCATGAAAGACCATCAGATCCAGTTGAAATTGGCGACAGTATTCCAGTCATTGATTTGGGAAAAGCTA
ATGGTGAAGAACGAAGTGTTGTTGTTAAAGATCTGTTGAAAGCTTTTGAAGAATATGGGTTTTTTCAGATAATCAATCATGGAGTACCTG
TAGATCTAATGGATGAAGCAATGAAAGTGTACAAAGAATTTTTCAGTCTTCCAGCTGAAGAAAAAGAAAATTATGCAAAAGATGCAGCTA
ATAATACCAATAGGGGTGCAGCTACACTGTACAGTAGCAGTGCTAAGCATTATGATTCAGAGGAGCATCGTTACTGGAGAGATGTGTTGG
AACATAGCTGCAATCTTGATGGAGAAGACAAAAAAACTTGGCCCGATAACCCTCCAAGATATAGGGAGGTTATTGGTGCCTATGGTGATG
AATTGAGAAGGGTGAGCAAAGTTATCTTGGGTATGTTAAGTGAAGGGCTAGGTTTGGAGGCAGGGTTCTTTGACAAAGAACTTGGGCAGA
GAATGCTTGTGAATCACTATCCAGCATGTCCAAATCCAAGTTTAACTTTGGGAGTTGGTGGACATTGTGATCCTAATCTCATAACCATTA
TCCAACAAGAAGTCTATGGTCTTCAAATATTGAAGGATGACAAATGGATTGGTGTGCAGCCTATTCGCAATGCATTTGTGGTTAATTCTG
GTTTACCAATTACGGTATATAGCAATGGAAAGCTAACTAGTGTTGCACATCGTGTGGTGACAAACACAACTGAGTCACGAACCTCCATTG
GTACTTTTATTTGCCCACATGAGATTGTTGAACCTGCAAAAGCACTTGTTGGTCCTGAGAATCCTCCACAGTTCAAACCCTTCCATTGGG
GAATCGATTTTATGCCACATTACCTCAGCAAGAAATCAGTGTACCACGCTTCATTGGAGCCCTTCAAAACAGAAGCTAATTAAGCATTAA
GGATATATCAAATCTATGCTGCTGCTGCTACTACTTCTTTTAATTTCCACTGAAATAAGAGCTTTAATTCAAAATGTCTTTCTAGTTTGT
ATTCTACTTACTTCATGAATAAGAAACTTCCAATCCTATTCTCTAAGAGAGAAACAAACAATGGCCATGGGAGTTGCTGCTCACTTCAAT
CGTTTCTGGTTCCTTCTCTTCGTCCTCTATTTCTCCATCTCCCTCTCCTCCATTTCTGGATCTGAAGAGGATTGTGTTTACAGTGCATAT
ATCCGAACTGGATCAATCATCAAAGGTGGAACCGATTCGATCATCAGTTTAACTCTCTTTGATGAAAACGGGTACGGTATTCGAATAAAA
AACCTGGAAGCTTGGGGTGGGCTTATGGGCCCGGGTCACAACTATTTTGAGAGAGGAAGTTTGGATATCTTCAGTGGTCGAGGTCCATGC
TTGACGGCGCCGATCTGTAAAATGAATTTGACTTCCGATGGAACAGGTTCAGGTCATGGATGGTACTGTAACTACGTTGAGGTCACCGTT
ACCGGAGTCCATAAACAATGCAACCAACAGTATTTCGAAGTGGAGCAGTGGCTGGCGACCGATGCGTCGCCTTATCAGCTGACTGCCATT
AGAGATCTATGCAAGAAGAAGACGAAGATTGATGAGCGTCGGCCGGTTAGCGAAATTGAATCTACTCCACAAGTTTCTCTCATTTAAGTC
AACCGCTTTATTGGCCCCCAACACTTTCCTATTTTATCCTTGTGAGTGTGAAGTTTATCAGGGACAAGAATGGTATTTGACCAAATGCCA
TTGTTGCACTCTGATTATTGTATGGTGGAATAATAAATTTGACTTTTTTCTGCTTTTACATTTCTATAATTATTTTGTTTTTTACTGTGC
TCGCTTATACTATTAGCTTTAACACTCATATATTAGCAAGTTAATACATATATTAACTTTATGATTAGTACTGTATTTTTTCATGATATT
ATATATAAATAATTTTTAATCTGTTTTAGTT

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
gad2	2-oxoglutarate-dependent dioxygenase 2	dioxygenase

Genomic locations (0)

None

Library representation (40)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPP	pollen pollen collected from open flowers	5426	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	18
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	5
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	4
Solanum lycopersicum	LA	Leaf Mature leaves	6589	1
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	2
Solanum lycopersicum	LE08	Fruit 8 days post anthesis	339	1
Solanum lycopersicum	LeMiToFr02	fruit	18697	3
Solanum lycopersicum	LeMiToLf01	leaf	30679	8
Solanum lycopersicum	LePS	root 5 weeks old plants	823	3
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	4
Solanum lycopersicum	LeWCAD	Seedling Two-week-old seedings	227	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	2
Solanum lycopersicum	Sl_RootGC02	root Developing giant cell	141	1
Solanum lycopersicum	Sl_RootSSH03	root	149	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	4
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	7
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	1
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	13
Solanum lycopersicum	cLER	leaf 4 weeks	5127	6
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	11
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	3
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	12
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	15
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	22
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	5
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	14
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	11
Solanum lycopersicum	cTOS	suspension cultures	8026	3
Solanum lycopersicum	cTSB	seed	1880	2
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	9
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (214)

Alignment image suppressed for unigene with 214 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (8)

Annotations (manual: 3 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312849	Tomato 200607 #1
SGN-U315202	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
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