Sol Genomics Network

Unigene SGN-U580272

Unigene Basic Information

Unigene ID:	SGN-U580272
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1272 bp

>SGN-U580272 Tomato 200607 #2 (181 members)
GACCAAACAAAAAAAACAACACAAAAAAAACAGAGCATACTCTGTTTTCCCCTGTTTTTCTCTAACAAAAAAACAGAGCATCCTCTGTTT
TCACTCAGATGACGAAAGAAGTCGAAGCGGTCACGAGCAGGCGGTGGAGTACTCCGCAAAGGATTACACTGATCCACCGCCTGCTCCTCT
GATCGATTTCGAGGAATTGACCAAATGGTCACTATACAGAGCAGCAATAGCGGAGTTCATTGCTACTCTGTTATTTCTATATATAACTAT
TCTTACAGTAATTGGTTACAAACATCAAGCTGATGTTAAAGCCGGAGGCGATATTTGCGGTGGTGTTGGTTTACTTGGTATTGCTTGGGC
TTTTGGTGGCATGATCTTTGTTCTTGTTTACTGTACTGCTGGTATTTCTGGTGGACACATCAACCCTGCTGTGACATTTGGGCTATTTTT
GGCAAGGAAGGTGTCATTGATTAGGGCTATATTGTACATGGTAGCACAATGTTTGGGTGCAATTTGTGGTGTAGGTTTTGTTAAGGCTTT
TCAAAGTGCATACTACAATAGATATGGTGGTGGTGTTAATGTCATGGCAGGAGGACACACCAAGGGTGTTGGTTTGGCTGCTGAAATCAT
TGGTACTTTTGTATTGGTCTATGTTGTCTTCTCTGCCACCGACCCTAAACGAAGCGCCAGAGACTCTCATGTCCCTGTCTTGGCCCCACT
CCCCATTGGATTTGCCGTATTCATGGTTCACCTTGCCACTATTCCGATCACCGGTACCGGAATCAACCCGGCGAGGAGTTTCGGGGCAGC
TGTGATTTTCAACGGTGATAAGGCGTGGGACGAACACTGGATTTTCTGGGTCGGGCCATTTATCGGAGCTTTCATCGCCGCTGTCTACCA
CCAGTACATTCTCCGAGCCGGAGCAATTAAAGCTCTTGGTTCATTCAGAAGCAATGCGTGATAAAAGATGGAATAATTTGAGAAATTTGT
AAATAAAAAGTTTGTTATGTCACATCTATCGTAAAATGTAACGTGCATCGAGCTTTAAAAAGTTTGTTATTTCAAATGGGGGAAAAAAAG
GTGTGACTATTCTATCCTTTTGATTTATTTTTTTGTTTTGTTTGCTTTGGATGTATTTAAGTTAAATCTATTTGTAATGTTTGGTTTTAT
CTAGTTGTCCCTTTGTTATCTTTTTTTGTATTTCTCCTTGATTTCATGTACATTATAATAATAGTGTATATGTTGGGTTAAATTTTTTTT
CATCCACTTTGG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (41)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	14
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	3
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	7
Solanum lycopersicum	LA	Leaf Mature leaves	6589	5
Solanum lycopersicum	LB	Leaf Mature leaves	3316	2
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	5
Solanum lycopersicum	LePS	root 5 weeks old plants	823	1
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	2
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	Sl_FruitQTL	late maturation (breaker and red ripe)	663	7
Solanum lycopersicum	Sl_LeafAichi01	leaf 4-week old	108	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	1
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	2
Solanum lycopersicum	Sl_RootN	Roots 5 weeks	165	1
Solanum lycopersicum	Sl_RootSSH04	root	171	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	28
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	5
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	4
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	3
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	2
Solanum lycopersicum	cLER	leaf 4 weeks	5127	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	8
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	16
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	11
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	5
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	2
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	4
Solanum lycopersicum	cTOS	suspension cultures	8026	5
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	2
Solanum lycopersicum	vSlycmRNA		8362	2

mRNA member sequences (181)

Alignment image suppressed for unigene with 181 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (2)

Annotations (manual: 1 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (2)

Unigene	Build
SGN-U312813	Tomato 200607 #1
SGN-U312814	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: