Sol Genomics Network

Unigene SGN-U578802

Unigene Basic Information

Unigene ID:	SGN-U578802
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1493 bp

>SGN-U578802 Tomato 200607 #2 (332 members)
GATCTATCTATCATCCATAATCTCATCCATTTTCTTCCCTCCATTCATTCATTCATAAACTTCCACAATTTTTCTTCATCAACACATAAA
CTGTACTGCTGTTGCTGTAATTCTCTTAAAGAACAATGGCTGCTCTCTCAGTAGCCAACACTTCTCTTAAGGTTAACAACAAAGGATTCT
CTGAATTCTCTGGTTTGAGAACCTCATCAGCTGTTCCATTTGGGAGGAAAACTAATGATGATTTGTTCTCTGTTGCTGGCTTACAAACCT
CTGCTATTGGAGGAAGGAAGAACAAGAGGATAGTAACTGAGGCAAAGTTGAAAGTGGCTATCAATGGATTTGGAAGAATTGGAAGGAACT
TCTTGAGGTGCTGGCATGGTAGAAAAGACTCACCTCTTGATGTCATTGCCATCAATGACACTGGTGGTGTCAAGCAAGCCTCTCACCTTC
TCAAATATGACTCCACCCTTGGCATCTTTGATGCTGACGTCAAGCCGGTTGGCACTGATGGCATCTCTGTCGATGGAAAAGTCATCCAAG
TCGTCTCCAACCGTGACCCTGTGAACCTCCCATGGGGAGAACTTGGAGTTGACTTAGTCATAGAAGGTACCGGAGTTTTTGTAGACAGAG
AAGGTGCCGGTAAACACATCCAGGCCGGAGCCAAGAAGGTGCTCATCACCGCCCCCGGAAAAGGTGACATCCCTACTTATGTTGTTGGTG
TCAATGCTGAACTTTACAGCCATGATGAACCTATCATCAGCAATGCCTCTTGTACCACCAACTGCCTTGCTCCTTTCGTCAAGGTTCTTG
ACCAGAAATTTGGAATTATCAAGGGAACAATGACAACTACTCACTCTTACACCGGTGACCAAAGGCTTCTTGATGCAAGCCACAGGGATC
TTAGACGTGCACGAGCTGCAGCACTGAACATAGTTCCAACCTCAACTGGTGCTGCTAAGGCTGTGGCTCTTGTTCTCCCAAGCCTCAAGG
GGAAACTCAACGGCATTGCCCTCCGTGTTCCCACCCCTAACGTCTCGGTTGTGGACCTTGTTGTGCAAGTCACCAAGAAGACATTTGCTG
AGGAAGTGAATGCTGCATTCAGAGAGGCCGCTGATAAGGAACTCAATGGCATTCTATCTGTCTGTGATGAACCACTCGTGTCAGTTGACT
TCCGGTGCAGTGACGTGTCATCAACTGTTGATTCTTCACTCACCATGGTCATGGGAGATGACATGGTTAAGGTTATTGCTTGGTATGACA
ATGAATGGGGTTACTCACAGAGGGTTGTTGATCTTGCTGACATTGTTGCAAACCAGTGGAAATGAAACATGAAAATAAAATAAAGCAGTA
CTACTAAATAGTGGCTTAATTTATATTTTTTTAACCTTGCTTGTAGATTCTTATTCCTTTTTGAAAATTGTAATGAGAACTATAACAATT
TTCCACCTTGTGAAATCTCAATTCAATAAAAGTCCCCTTTCTTGTCTTTATAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc04g009030	Solyc04g009030

Genomic locations (0)

None

Library representation (33)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	5
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	10
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	2
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	21
Solanum lycopersicum	LB	Leaf Mature leaves	3316	10
Solanum lycopersicum	LC	Leaf Mature leaves	5712	26
Solanum lycopersicum	LeMiToFr02	fruit	18697	2
Solanum lycopersicum	LeMiToLf01	leaf	30679	7
Solanum lycopersicum	LeTransC6	leaf 1.5-month old plants	150	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	3
Solanum lycopersicum	Sl_LeafAichi01	leaf 4-week old	108	1
Solanum lycopersicum	Sl_LeafWT01	leaf 1.5-month old plants	106	3
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	10
Solanum lycopersicum	cLEB	vegetative shoots including meristems and small expanidng leaves 8 weeks	898	4
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	14
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	5
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	18
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	4
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	27
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	15
Solanum lycopersicum	cLER	leaf 4 weeks	5127	21
Solanum lycopersicum	cLES	leaf 4 weeks	5243	21
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	42
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	10
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	13
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	10
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	16
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	t3_tus	Rearrayed collection of L. esculentum cDNA clones	1883	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	LH_Ea	Glandular Trichomes	3840	1
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	4

mRNA member sequences (332)

Alignment image suppressed for unigene with 332 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (6)

Annotations (manual: 5 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312458	Tomato 200607 #1
SGN-U312461	Tomato 200607 #1
SGN-U333580	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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