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Unigene SGN-U500347

Unigene Basic Information

Unigene ID:	SGN-U500347
Unigene Build:	Nicotiana tabacum #2
Date:	2008-07-17
Organism:	N.tabacum
Alternative ID:	none
mRNA sequence:	Length: 434 bp

>SGN-U500347 Nicotiana tabacum #2 (1 members)
ATGAAAGAGGCCCTTACATTGTCAAGTATAGGGGTGAACCCGCAGTTCATCACATTCACAAAGTGTTACCATGGAATCAGACAAGTATAT
ATGTGTTCGAGAGACGGCACCACAAAATAGTGTGGTGATTGTTGATATGAATATGCCAATGCAGCCTTTGCGCCGCCCTATTACTGCTGA
CTCTGCTCTTATGAATCCCAATTCCGGAATTTTGGCTCTAAAAGCTCAAGTACCAGGAACTACTCAAGATCACTTACAAATTTTTAATAT
TGAGGCAAAGCAGAAAATGAAGTCACATCAGATGCCCGAGCAGGTTGTTTTCTGGAAGGTGGATTACCCCGAAGATTATAGGAATTGTCA
CACAAACCTCAGTCTATCATTGGCCAATTGAAGGTGATACTGAGCCTGTAAAGATGTTTGATAGAACAGCCAGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Nicotiana tabacum	MAT001		13645	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E1095262
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

Expression data for Unigene: SGN-U500347

Template:	BP529195_at
Platform:	Affymetrix TobEA
Experimental Design:	TobEA

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|6016683\|gb\|AAF01510.1\|AC009991_6	171	7e-45	94.32	264 bp (60.8%)	2
Description:	putative clathrin heavy chain [Arabidopsis thaliana] >gi12321871\|gb\|AAG50967.1\|AC073395_9 clath…
arabidopsis	blastx	At3G08530.1	171	8e-48	94.32	264 bp (60.8%)	2
Description:	clathrin heavy chain, putative \| chr3:2587177-2595417 REVERSE
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P523110 (117 Aa)

TRSSSHSQSVTMESDKYICVRETAPQNSVVIVDMNMPMQPLRRPITADSALMNPNSGILALKAQVPGTTQDHLQIFNIEAKQKMKSHQMP
EQVVFWKVDYPEDYRNCHTNLSLSLAN

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P436665 (145 Aa)

XERGPYIVKYRGEPXSSSHSQSVTMESDKYICVRETAPQNSVVIVDMNMPMQPLRRPITADSALMNPNSGILALKAQVPGTTQDHLQIFN
IEAKQKMKSHQMPEQVVFWKVDYPEDYRNCHTNLSLHWPIEGDTEPVKMFDRTAS

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (0)

None

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