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Unigene SGN-U499396

Unigene Basic Information

Unigene ID:	SGN-U499396
Unigene Build:	Nicotiana tabacum #2
Date:	2008-07-17
Organism:	N.tabacum
Alternative ID:	none
mRNA sequence:	Length: 338 bp

>SGN-U499396 Nicotiana tabacum #2 (1 members)
ATTACGGCCGGGGGGGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTGAAAGCCGCC
AAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCT
ACGAAGGAAGGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGAGGTGCGAAAGCATGGGGAGCGAACAGGATTAGATACCC
TGGTAGTCCATGCCGTAAACGATGAGTGCTCGCCCTTGGTCTACGCGGATCAGGGGCCCAGCTAACAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
AF161095	small subunit ribosomal RNA	small subunit ribosomal RNA

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Nicotiana tabacum	KR2B	Roots	5760	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E1005326
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

Expression data for Unigene: SGN-U499396

Template:	EB443313_at
Platform:	Affymetrix TobEA
Experimental Design:	TobEA

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|167630418\|ref\|YP_001680917.1\|	83.2	6e-15	63.89	216 bp (63.9%)	-3
Description:	hypothetical
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P435800 (105 Aa)

XVSWAPDPRRPRAALIVYGMDYQGSNPVAPHAFAPQRRWDPESCLXLLAFLRRSPDFTPTQKFHSPLSHSSEXGFESIPPVFGGFHFQPD
SPPTCPLRPVIPKNT

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P522115 (86 Aa)

SCSLPMLSHLSVGRDPESCLRFWPSFVDLRISPLHTKFHSPLSHSSELVSRAFRQFLAAFTFNPIHRLRALYAQSFRRTLAPPPAV

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (0)

None

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