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Unigene SGN-U454621

Unigene Basic Information

Unigene ID:	SGN-U454621
Unigene Build:	Nicotiana tabacum #2
Date:	2008-07-17
Organism:	N.tabacum
Alternative ID:	none
mRNA sequence:	Length: 436 bp

>SGN-U454621 Nicotiana tabacum #2 (1 members)
GCCATTACGGCCGGGGAACTAAAAGTACCTCACAAGAAGAAACCAAAACCAGATGTTGGATATCCTGGTGGATTATGGTTTGATCCTTTT
ATGTGGGGAAGAGGATCTCCTGAACCTGTTATGGTTTTGAGAACTAAGGAGATCAAGAATGGTCGACTCGCTATGTTAGCTTTTGTTGGA
TTTTGTTTTCAGGCTGTTTATACTGGACAAGGACCTATTGAGAATTTAATGTCACATCTTGCTGATCCTGGACATAACAACATATTCGCG
GCTTTTGGATCCCAATGATGGTATTATATTCAAGATAGAAGAGATTCAGAGTTGAAGATACTTGCACCAACAATTACAAATGACTACATT
GTACCAAGAAATTCTTCTTTATGTTAATGCATTCATGTAAATGAGATATCATTCTTGACATAATCGCGGTTTCTTC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Nicotiana tabacum	KL5B	Leaf	6255	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E780068
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (2)

Expression data for Unigene: SGN-U454621

Template:	EB429818_at
Platform:	Affymetrix TobEA
Experimental Design:	TobEA

Template:	EB429818_s_at
Platform:	Affymetrix TobEA
Experimental Design:	TobEA

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147795581\|emb\|CAN69989.1\|	158	1e-37	89.74	234 bp (53.7%)	1
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At1G19150.1	144	2e-35	85.71	231 bp (53.0%)	1
Description:	Symbols: LHCA2*1, LHCA6 \| LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll b…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P475591 (95 Aa)

AITAGELKVPHKKKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGQGPIENLMSHLADPGHNNIFA
AFGSQ

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P394341 (116 Aa)

AITAGELKVPHKKKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGQGPIENLMSHLADPGHNNIFA
AFDPNDGIIFKKKRFRVEDTCTNNYK*

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U370189	Nicotiana tabacum #1

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