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Unigene SGN-U452346

Unigene Basic Information

Unigene ID:	SGN-U452346
Unigene Build:	Nicotiana tabacum #2
Date:	2008-07-17
Organism:	N.tabacum
Alternative ID:	none
mRNA sequence:	Length: 365 bp

>SGN-U452346 Nicotiana tabacum #2 (1 members)
ATTACGGCCGGGAGACTAAGGCTGTTGCATTTGCCGGACTCAGTAGTCAAAATCCAGGAGTCATCACTATCGCGAATGCAGTATTTGGTT
CAGACCCACCAATCAATCCTGATGTTCTTACGAAAGCATTCCAAGTTGAAAAGAAAGTTGTGGATTACCTCCAATCACAATTCTGGTGGG
ATAACAACTAAAAGAATAGTAGCAAACTATCAATCTACAAATAGTTATGGTTATGTGAACTACTTGTGTCACATAAATAAGTAATGTTTC
CGACTGGTTTTCCTCTCCATTTTAGTGTGGTGTATTGGATGAGGATATGTTATGGCTCGTTATGGAATAAAAATAAGTTTACTGTTTGTG
ATACT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Nicotiana tabacum	KR2B	Roots	5760	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E798833
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (1)

Expression data for Unigene: SGN-U452346

Template:	EB447242_x_at
Platform:	Affymetrix TobEA
Experimental Design:	TobEA

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|147779427\|emb\|CAN74480.1\|	105	1e-21	83.05	177 bp (48.5%)	3
Description:	hypothetical protein [Vitis vinifera]
arabidopsis	blastx	At5G39100.1	75.1	1e-14	64.81	162 bp (44.4%)	3
Description:	Symbols: GLP6 \| GLP6 (GERMIN-LIKE PROTEIN 6); manganese ion binding / metal ion binding / nutr…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P392195 (63 Aa)

XYGRETKAVAFAGLSSQNPGVITIANAVFGSDPPINPDVLTKAFQVEKKVVDYLQSQFWWDNN*

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P473250 (87 Aa)

ITAGRLRLLHLPDSVVKIQESSLSRMQYLVQTHQSILMFLRKHSKLKRKLWITSNHNSGGITTKRIVANYQSTNSYGYVNYLCHINK

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U368481	Nicotiana tabacum #1

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