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Unigene SGN-U286725

Unigene Basic Information

Unigene ID:	SGN-U286725
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	286725
mRNA sequence:	Length: 242 bp

>SGN-U286725 Solanum tuberosum #4 (1 members)
GCACAGCACCAACCANATCCCAAATATTATTAAAACTTTGGTCTTCTTTCAAATGAGACCATTTTTTTCAGCAAAACATGCCAACTTCCT
CCCAAATATATCCCCAACAATAATCAAAACACTAATATCATAAACAAACTCAAAATATTGAAAGCAAAATAATCATGCCGCGACAATATT
GTTCCACTGTCAAATTGTCTTTCCTCAGTACCTGTAGTGAGCAGGCTTGTAAGGACCCTCAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ252503	S-adenosyl-L-homocysteine hydrolase	hydrolase

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	STM	mixed tissues	14805	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E411242
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 0 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match
genbank	blastx	No significant hits ( or none blast was used over this dataset )

arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P228742 (43 Aa)

HSTNXIPNIIKTLVFFQMRPFFSAKHANFLPNISPTIIKTLIS

SignalP predicts non-secretion with a score of 0.25

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P97138 (25 Aa)

EGPYKPLTTGTEERQFDSGXNIVAA

SignalP predicts non-secretion with a score of 0.022

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	694	Ado_hcyase Porphobil_deam 2-Hacid_DH_C TrkA_N THF_Dhg_Cyh	27
2	22494	Ado_hcyase Porphobil_deam 2-Hacid_DH_C TrkA_N THF_Dhg_Cyh	27
5	56700	Ado_hcyase Porphobil_deam 2-Hacid_DH_C TrkA_N THF_Dhg_Cyh	25
1.1	101772	S-adenosyl-L-homocysteine hydrolase - Molecular Function: adenosylhomocysteinase activity (GO:0004013) - Biological Process: one-carbon compound metabolism (GO:0006730) Small hydrophilic plant seed protein	39
2	118850	S-adenosyl-L-homocysteine hydrolase - Molecular Function: adenosylhomocysteinase activity (GO:0004013) - Biological Process: one-carbon compound metabolism (GO:0006730)	28
5	129268	S-adenosyl-L-homocysteine hydrolase - Molecular Function: adenosylhomocysteinase activity (GO:0004013) - Biological Process: one-carbon compound metabolism (GO:0006730)	28

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U243240	Solanum tuberosum #3

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