Sol Genomics Network

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Unigene SGN-U281320

Unigene Basic Information

Unigene ID:	SGN-U281320
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281320
mRNA sequence:	Length: 1633 bp

>SGN-U281320 Solanum tuberosum #4 (9 members)
GGTGAGCAAGCCTGTAAACCATAATCTTGGTAAGAAGCAAGGACAAGTGCAGAAGGGCATTATGGATGGAGGCAATCAAAAAAAGAGTGG
TGCCGAATCAGGAAATGACAGTGGAGATGGTGATAAAGTAAATAGTCGTGCCATGGAAAATGGCAATGGGCGTTCTAAAGGTAGTAAGGA
AAATGGAGTAGTGCAGGCTAACGGTAAAGAGAATAGAAGCTCTGATTCTGGGGCTTTTGATGTAAATAAGCTACAGAAGCTTAGGGCTAA
AGGTGGAAAGAAAACCGATACCATTGTAAAGGATTCCAAGGCAGAGCCTACAAAAAAGGCAAAGAAGAACAGAGTCTGGGATGATTCACC
TAAGGAGTCGAAATTGGATTTCACGGATCCTATGTGTGAGAATGCAAATGGAAATACAGCAGTTGTGGAAGCAGTTCAAGGTGAGAGTAT
GATGGACAAAGAGGAGATTGTGAGTAGTGATAGTGAAACTGAGGAGGATGAGGAGCCAGGGAAAGACAACAAGGTCGAGGCAAAGAAGAA
AGGTTGGTTCTCATCCATGTTCCAGAGTATCGCAGGAAAGGCAAATTTGGACAAAGCTGACTTAGAGCCAGCTTTAAAAGCTCTTAAGGA
CAGGCTGATGACCAAGAATGTGGCCGAAGAAATTGCTGAAAAGCTTTGTGAATCAGTGGCTGCAAGTTTGGAGGGTAAAAAGCTTGGCTC
ATTTACAAGAATTTCTTCAACAGTTCAGGCAGCAATGGAGGAGGCCCTTGTTCGGATCTTAACTCCTAAACGTTCCATTGATATCTTGAG
GGATGTTCATGCCGCAAAGGAACAGGGGAAACCATATGTTGTGGTTTTCGTAGGAGTAAATGGGGTTGGAAAGTCAACCAATCTTGCTAA
GGTTGCTTATTGGCTTCAGCAGCACAAGGTCAATGTTATGATGGCTGCGTGCGACACATTTCGATCCGGAGCTGTAGAGCAGCTCCGTAC
TCATGCTCGGAGACTTCAGGTCCCCATATTTGAGAAGGGCTATGAGAAGGATCCTGCTATTGTTGCCAAGGAAGCAATCCAGGAGGCTAA
TCGAAATGGTTCAGATGTCGTTCTTGTTGATACAGCTGGTCGAATGCAGGATAATGAACCACTGATGCGAGCACTTTCGAAGCTTATATA
TGTGAACAGTCCAGATCTGATCCTTTTTGTTGGTGAGGCACTTGTCGGAAATGATGCTGTTGATCAGTTATCAAAGTTCAACCAGAAACT
AGGTGACCTTTCACCCTCACCAAATCCAAGATTGATTGATGGAATTCTCCTTACCAAGTTTGACACCATTGATGATAAGGTGGGAGCAGC
GTTGTCCATGGTTTACATATCCGGAGCCCCGGTCATGTTTGTGGGATGTGGTCAGTCCTACACAGACTTGAAGAAGCTGAACGTCAAGTC
CATAGTGAAGACACTCCTCAAATGAGAACACACAATCTCTGTCTCTACATTTTAGCTTGGCTTTTAATGTCTGTTTAAGTAGTGTTGAAC
ACTTTGTATGTTGCTGCTTCAGTTCTGTTTGTAACTTTGTATTCTCTCATCTGTGATTTCTCACTATTTTGATTTTGAAGGTGAATCATT
TGACTTAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (5)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	4
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	1
Solanum tuberosum	STM	mixed tissues	14805	2

mRNA member sequences (9)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 7 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	573	SRPp54 ABC_transpt_FtsY SRP54	32
2	24448	SRP_sub Rib_reduct_arch SRPp54 NACHT_NTPase SRP-alpha_N ABC_transpt_FtsY SRP54	8
5	59410	SRP_sub Rib_reduct_arch SRPp54 NACHT_NTPase SRP-alpha_N ABC_transpt_FtsY SRP54	6
1.1	101860	GTP-binding signal recognition particle SRP54 G-domain - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle (sensu Eukaryota) (GO:0005786) - Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614)	32
2	121242	Signal recognition particle receptor alpha subunit N-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: signal recognition particle binding (GO:0005047) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle receptor complex (GO:0005785) - Biological Process: intracellular protein transport (GO:0006886) GTP-binding signal recognition particle SRP54 G-domain - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle (sensu Eukaryota) (GO:0005786) - Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	7
5	131478	Signal recognition particle receptor alpha subunit N-terminal - Molecular Function: GTPase activity (GO:0003924) - Molecular Function: signal recognition particle binding (GO:0005047) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle receptor complex (GO:0005785) - Biological Process: intracellular protein transport (GO:0006886) GTP-binding signal recognition particle SRP54 G-domain - Molecular Function: RNA binding (GO:0003723) - Molecular Function: GTP binding (GO:0005525) - Cellular Component: signal recognition particle (sensu Eukaryota) (GO:0005786) - Biological Process: SRP-dependent cotranslational protein targeting to membrane (GO:0006614) AAA ATPase - Molecular Function: nucleotide binding (GO:0000166) - Molecular Function: nucleoside-triphosphatase activity (GO:0017111)	7

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U255416	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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