Sol Genomics Network

Unigene SGN-U281209

Unigene Basic Information

Unigene ID:	SGN-U281209
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	281209
mRNA sequence:	Length: 910 bp

>SGN-U281209 Solanum tuberosum #4 (108 members)
GTTTCTTTGAAGTAAAAAAAAAAAAAAACGTTTTATAGCTAAGTAGTAACGTAATGGCTTCCTCAATTGTCTCCTCAGCAGCCGTTGCTA
CCCGTAGCAATGTTGCTCAAGCTAGCATGGTCGCACCCTTCACCGGACTCAAATCCGCCGCGTCTTTCCCCGTTACTAAGAAGAACAACA
ACGTTGACATTACTTCCCTTGCTAGCAACGGTGGACGTGTTAGATGCATGCAGGTGTGGCCACCAATTAACATGAAGAAATACGAGACAT
TGTCATACCTTCCTGACTTGTCCGATGAGCAATTGCTTAAGGAAGTTGAGTACCTTTTGAAAAATGGATGGGTTCCTTGCTTGGAATTCG
AGACTGAGCACGGATTTGTGTACCGTGAGCACAACAGCTCACCAGGATACTACGATGGTAGATACTGGACCATGTGGAAGTTGCCTATGT
TTGGGTGCACTGACGCAACCCAGGTGTTGGCTGAGGTTCAAGAGGCCAAGAAGGCGTACCCACAGGCCTGGATCCGTATTATCGGATTCG
ACAACGTTCGTCAAGTGCAGTGCATCAGTTTCATTGCCTACAAGCCAGAAGGATACTAAATTTCATCAAACCTATAATTAATTACTCCTA
TCGACATGTTTTTTGCGTTTTGTACCGGTGTATTTTCCTCGATTCCGACCAAGTTATGAGAAATTAATAATGATGAATCTTTAATTAATT
CGACCAAGTTATGAGATATTAATAATGATGAATCGGTGCTTATATGTTTTAAAAAAAAAAAAAAAAAANNNNACCCTGTGTGTCACTCCA
GCAGAGCAGATAAAGCTATAAGAATGCAAGCTGCCAGTCTCGCCTTTCACCCTCCGGCACTCCATACTTCACCTTCTTACTTCTCCTCCA
AACTTCCCCA

[Blast] [AA Translation]

Associated Loci (3)

Locus symbol	Locus name	Gene activity
bcS2	ribulose-(1,5)-bisphosphate carboxylase/oxygenase S2	ribulose-(1,5)-bisphosphate carboxylase/oxygenase
rbcs3	ribulose-(1,5)-bisphosphate carboxylase/oxygenase small subunit	photosynthesis
rbcs	ribulose bisphosphate carboxylase	ribulose bisphosphate carboxylase

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	2
Solanum tuberosum	MXLF	Leaves	6585	19
Solanum tuberosum	PPC	leaf 6 week old	5062	31
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	8
Solanum tuberosum	STM	mixed tissues	14805	5
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	28
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	12
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (108)

Alignment image suppressed for unigene with 108 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	124	RuBisCO_small	107
2	22148	RuBisCO_small	54
5	56385	RuBisCO_small	53
1.1	101403	Dehydrin - Biological Process: response to stress (GO:0006950) - Biological Process: response to water (GO:0009415) Haloacid dehalogenase-like hydrolase - Molecular Function: catalytic activity (GO:0003824) - Biological Process: metabolism (GO:0008152)	270
2	118508	Ribulose bisphosphate carboxylase small chain - Cellular Component: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) (GO:0009573) - Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977) - Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984)	74
5	129006	Ribulose bisphosphate carboxylase small chain - Cellular Component: ribulose bisphosphate carboxylase complex (sensu Magnoliophyta) (GO:0009573) - Biological Process: carbon utilization by fixation of carbon dioxide (GO:0015977) - Molecular Function: ribulose-bisphosphate carboxylase activity (GO:0016984)	70

Preceding Unigenes (1)

Unigene	Build
SGN-U255386	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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