Sol Genomics Network

Unigene SGN-U274406

Unigene Basic Information

Unigene ID:	SGN-U274406
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	274406
mRNA sequence:	Length: 1921 bp

>SGN-U274406 Solanum tuberosum #4 (7 members)
CAAAAAAGGCCCCTGAGTAGAAAAGAAAGGTTCCAAAAAAGGTTCAATAAAAAAGAAAAGTTCAACCGAAATGATCGTTTCTCCAAGAAA
CGAAGATTTGGAAACTCCGATTCATCAAATACTTGTGATCAAAAGGGCTTTCCTGCAGGAAAACAGGATGTAAACCGTGAATCTGTAACT
CAGGTTACGAAAAGTGCGAGAGAATCAACACTGCTGGAGAAACTATTGAGTTCAGATATTCGAAGAGATAAACGACGCCTATTGCAGGTC
TTTAGGTTCATGACCATGAATTCTTTCTTTAAAGATCAGCCGGGGAAACCCTTGAGGTTTCCTCGAGTGTTACTTAAGGAAACAGGGAAA
GAAATTGAAGCTGCTGAAGAAATATTTGATGTTATAGATACAACCATTGAAAAATCATCATCAGACAACGCCAATGGCGAAGAAGATAAT
ATTGCTGAATTTACAGAAGCAGTTAGTAGTGAGTTCCAAGAAAATAGTAGCAGTGAAAGTGAAGACCCTGAGGAAGAACAAATCTCTGGT
TAACAAAACAGCCTGTATCTCTGTCACTGTTTATTGTATATGCTTGTTATTTTCATCTTAATTATGTGTAAATTCTAATGTCTAAATATC
AAGGCTGGTACTGAAATTTTGATTTTCAAGGGTTATTTGATGAAACTTTTGGCATGTAGAATAACAGTGATGTCTGTTAATATTTGTTTA
TTTCAAAAAAAAAACCTCGTGCCGAATTCGGCACGAGGATTTGTTAAAGTGAGGGTCAGATCAGTCCGTATTCCTCAAATTGGGGACAAG
TTTAGCAGTAGACATGGTCAGAAGGGAACAGTCGGCATGACATATACACAAGAAGATATGCCATGGACCGTGGAAGGCATTAGTCCTGAT
ATTATTGTGAATCCTCATGCTATTCCTTCTCGAATGACTATTGGTCAGCTGATTGAATGTATTATGGGGAAGGTTGCTGCACACATGGGA
AAAGAAGGTGATGCCACTCCCTTTACAGATGTTACTGTCGATAACATCAGCAAAGCTCTGCATAAATGTGGTTACCAGATGCGTGGTTTT
GAGACCATGTACAATGGTCATACTGGGCGGCGGCTTAGTGCAATGATATTCCTTGGTCCCACGTACTACCAGCGCCTGAAGCATATGGTT
GATGACAAGATTCATTCTAGAGGCAGAGGCCCTGTGCAAATCCTCACAAGGCAGCCTGCGGAAGGTCGGTCACGTGATGGTGGTCTTCGA
TTTGGAGAGATGGAGCGAGATTGTATGATTGCTCACGGTGCTGCTCATTTTCTCAAGGAGCGGTTATTTGACCAAAGCGATGCATACAGA
GTTCACGTTTGTGAGCGCTGTGGGCTGATAGCCATTGCCAACCTCAAGAAGAATTCTTTCGAATGCAGAGGTTGCAAGAACAAAACTGAT
ATCGTTCAGGTTCACATTCCCTATGCATGCAAATTGCTTTTCCAGGAGCTAATGGCTATGGCTATAGCTCCAAGAATGCTTACAAAGGAT
GTCAAGCTAGCCAAAGATCAAAAGAAGAAAGCAGCTTGATTAATTTAGTCCATTCCGAGAAAAAAGTTGCCTATTTTATAGATTGAAAGG
TCTTACTTTACCAGTAGTCAGTTTTTCATCCACAATATGTGGATCTACTACTACTTATTGGTTTTAGAATGGTTGTAGTATCTAGTGAGA
ACAACATCCTTATGAACCCAGCAGGTACTGTGGTGTCAAGGATGGAGTAATTCTCACATGTAAAATATAAGTAATCGTTATATCTGAAGT
TTCTCTTCGAAAAACTCCTGCTTTTCATGTATAAGAGGCTCTTCGTTAGTCTTGCATCAAATTGAATGAGTTGAAGCTTTTCAGTTTTGA
CAATGAAAAAAAAAAAAAAAAAAAAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (7)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDC	Sprouting Tubers	5177	1
Solanum tuberosum	CSWB	Tubers	6124	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	1

mRNA member sequences (7)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	665	RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_B RNA_pol_Rpb2_7	28
2	22770	RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_B RNA_pol_Rpb2_7	20
5	57325	RNA_pol_Rpb2_3 RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 RNA_pol_B RNA_pol_Rpb2_7 RNA_pol_Rpb2_4	14
1.1	101927	RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	28
2	119070	RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	21
5	129582	RNA polymerase Rpb2 domain 3 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 6 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 2 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase beta subunit - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350) RNA polymerase Rpb2 domain 7 - Molecular Function: DNA binding (GO:0003677) - Molecular Function: DNA-directed RNA polymerase activity (GO:0003899) - Biological Process: transcription (GO:0006350)	18

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (2)

Unigene	Build
SGN-U258227	Solanum tuberosum #3
SGN-U266325	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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