Sol Genomics Network

Unigene SGN-U270248

Unigene Basic Information

Unigene ID:	SGN-U270248
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	270248
mRNA sequence:	Length: 1672 bp

>SGN-U270248 Solanum tuberosum #4 (22 members)
AAATTATTCCAAAAAAATCCTCCATATTCTTCTCCCCTTTCTTCCCCACCCACGCACCCACCCTACCCCTCTTGTTATGTGCTGTTCTCT
GTCTGGTTTCTGAAGACGACTCGTAAAATCATCTAAAAAATTCCCATAATCAGATCTAACAAAAATGGTTCCTATTACGGCGTCGTTTTC
TTCTGATTCTTCATCATCATCCATGGATCTACTCATGTAAATTCCAATAATATATTCAACAATTTTTCCGGTAGATTATTCCTAATGGAT
TTGGATGAATTCCGGTTGATTCTATCGGAATCGAAGGTAGATGTATGGACGATGATTGATGCGGCGATTTCTGTTGCTGCAGTTGACTGT
GCCGATGAAATGAAACGTCGACGTGATGGAATCGTTGAAAAATTGTACTCCACGCGCTCCCTGAGCTCAGATGACGTTGGTAATGGTCAG
CATAGGTTAGATAACGGTACTAGAAATGTGGAGATGATGATGAATAAGAGTCCGTTAACACCGGAGTCGAATCAACGGGAGAAGGAGAAT
AGTAATGAGAAGAATGAGGAAGAGGAAGATGCAGATCCGTATGGAGGATTGTTTGATGATGATGATGAACAAACTCAAATTCTTACAATC
AAACAACAGCTTGAAAATCCACAACTGTCGGATGAGGATGTGGTTGACTTGCTTCAAACTTTAGCAGATATGGATATTACATTCCAAGCT
CTTCAGGACACTGATATTGGAAGGCATGTGAATCAATTGAGGAAGCATCCATCAAGTGAAGTTAGGAGATTGGTGAAGATGCTTGTGAGA
AAATGGAAAGGAACTGTTGATGATTGGGTTAGGCTCAACCCGCCTGAGCAACATGAGTCTGCAAATCTTATTGCTGCTGATGATGACTCG
CCCCAACAGAGTGTACGGAGGAGTCAACAGAATGGTAATCATCAGGTTCCTGACTTTGCATACTCACCGAATCCTCGAAATGGGAGTTCG
AGCTCGGACAGGAATAATTCAGAATCAGAGTACAAGCCTAAACCAGTTCCCCAACGGAATGTAACCCCTACTAGACCACTGCAGTCTGCT
CCTAAACCTGCTTCGGCTCCTCCCCCAAGTAGACCTCCTCCGAGGGAATCAGCTATAGATATTGAGAGGCTGAATTCAGCAAGGAGGCGG
CTTCAGGAGAATTACCAAGAAGCTCAAAATGGTGTGGTTTTGGATTTGTATTATTAGCAATATCAAAAGTAGAGTTAGTTGCTCTAGTTG
GATTTTATTGACTGTTGATGTATTGTTTTTGCTTTTGTGAAGCTAAAAAGCAAAGGACAATACAGGTGATGGATATTCATGAGATTCCAA
AACCAAAGAACGGCTTCATTGCCAAGAATAAAGGCGGCTTTCAGGGCAGGCATCATCGTTGATTTTTTCAGAAAAAAAGCCCCCCCGTCT
GTATGTACAATAGTACTGCTCCTCAGCTTTAAAGTTCAAAACTCTGCATCTTTTGTGATAACAGGGATTTTACCCAAACGGTTCATCCCT
GTTACTTCTACCTTTTTCTTTCCAATCAAAAACAATTTAGTCCTTCTATACTTTTTTTGGTTAACTAATCTATAGCTTTTGTTGGAACGT
TATTTGCACTTGGATTTTAAAATTTTCCTCTTAACTGGTTTTGAAAAAACAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (15)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	1
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	1
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	2
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 2 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	1423	TFSII	13
2	24835	Clathrin_lg_ch TFSII Radical_SAM	7
5	60055	Clathrin_lg_ch TFSII Radical_SAM	5
1.1	102535	Transcription factors TFIIS elongin A CRSP70 conserved	13
2	121274	Transcription elongation factor S-II N-terminal - Biological Process: transcription (GO:0006350) - Biological Process: defense response (GO:0006952) RNA polymerase II transcription factor SIII subunit A - Cellular Component: nucleus (GO:0005634) - Cellular Component: integral to membrane (GO:0016021) - Biological Process: regulation of transcription (GO:0045449) Transcription factors TFIIS elongin A CRSP70 conserved	7
5	133932	Transcription elongation factor S-II N-terminal - Biological Process: transcription (GO:0006350) - Biological Process: defense response (GO:0006952) RNA polymerase II transcription factor SIII subunit A - Cellular Component: nucleus (GO:0005634) - Cellular Component: integral to membrane (GO:0016021) - Biological Process: regulation of transcription (GO:0045449) Transcription factors TFIIS elongin A CRSP70 conserved	4

Preceding Unigenes (2)

Unigene	Build
SGN-U245880	Solanum tuberosum #3
SGN-U265790	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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