Sol Genomics Network

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Unigene SGN-U268653

Unigene Basic Information

Unigene ID:	SGN-U268653
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268653
mRNA sequence:	Length: 812 bp

>SGN-U268653 Solanum tuberosum #4 (22 members)
GTTTTCTAAGAGCTTGGCATCTCTTCCAAAACAAAAGCAGCAGCCGCAGTGTAACACAGTGAAACCCTAGCCATGTCTCTGGTTGCAAAC
GAAGAGTTTCAGCACATTCTTCGTGTGCAAAACACAAATGTTGATGGAAAGCAGAAGATCATGTTCGCTATGACCTCTATCAAAGGTATC
GGTCGCCGTTTTGCTAACATTGCTTGCAAAAAAGCCGATATCGACATGAACAAGAGGGCTGGTGAGCTTACTGCTGCAGAGCTTGATAGC
TTGATGGTAGTTGTGGCTAATCCTCGCCAATTCAAAATCCCAGATTGGTTTTTGAACAGACAGAAGGATTACAAGGATGGCAAGTTTTCC
CAAGTTACATCTAATGCCCTTGACATGAAACTTAGGGATGACTTGGAAAGGCTGAAGAAGATCAGGAATCACCGTGGTTTGCGTCACTAC
TGGGGCCTCCGTGTCCGTGGTCAGCACACAAAGACCACTGGTCGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAGAGATAAATTATCTAC
ATGCAGATTCCTTTATGTTTTGTGCTTCTCTTTAGAATGCGTAATCTGGACACTTGCAAAAAGTTTGTTAGGGTATTTTTGTATTGTTTG
CATTTGAACTTTCTTGTCCCGCCTTTTGGAGATCTATAGTTCCTATAAATCTTCCCATGGCAGTGCAAGCATGTTTTTACTTTTGGGATA
AAAGTTTTGTCGATTGCACTTGGATTAATACATCAAATATGAGTACTTTTTACGGAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA
AA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	2
Solanum tuberosum	CSCH	Tubers	5038	1
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	SLMW	Assorted Stolon/Tuber Developmental Series	1368	1
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	SWST	Stolon	5942	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	2
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	2
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	2
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	1
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	1

mRNA member sequences (22)

Alignment image suppressed for unigene with 22 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 5 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	854	Ribosomal_S13	22
2	22960	Ribosomal_S13	17
5	57072	Ribosomal_S13	17
1.1	102092	Ribosomal protein S13-like H2TH Ribosomal protein S13 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412)	22
2	119306	Ribosomal protein S13 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S13-like H2TH	17
5	129650	Ribosomal protein S13 - Molecular Function: RNA binding (GO:0003723) - Molecular Function: structural constituent of ribosome (GO:0003735) - Cellular Component: intracellular (GO:0005622) - Cellular Component: ribosome (GO:0005840) - Biological Process: protein biosynthesis (GO:0006412) Ribosomal protein S13-like H2TH	17

Preceding Unigenes (2)

Unigene	Build
SGN-U243581	Solanum tuberosum #3
SGN-U243583	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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