Sol Genomics Network

Unigene SGN-U268381

Unigene Basic Information

Unigene ID:	SGN-U268381
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268381
mRNA sequence:	Length: 2262 bp

>SGN-U268381 Solanum tuberosum #4 (119 members)
CACTCTCTAGCAGTTTCCTTTTATCCAAAGAAGAAGATAAACCCACTCCCCAGCTACTTCTTCAACAACACTATAGTAAAACCCTAATCT
TCTTTCAAGGGATAGATGGCATCTACTTTTGCTGGTATGTCCTCAGCAGGTCCCTTGGCTGCTCCCAGCACTTCCTCAAACAAGCTTTCC
TCTGTTGCTAATATATCTTCCACCTCTTTCGGGAGCAAAAGAAATGTTGCACTAAGAAAGTCACGCAGGCCGACAATTTTGGCTGCAGCT
AAAGAGTTGCACTTCAACAAGGATGGGTCAGCTATCAAGAAGCTACAGAATGGTGTGAACAAACTTGCTGATCTAGTTGGAGTTACTCTT
GGCCCAAAAGGCAGGAATGTTGTCCTTGAGAGCAAGTATGGTGCTCCAAAAATTGTTAATGATGGAGTTACTGTGGCCAGAGAGGTTGAA
TTAGAGGATCCAGTAGAAAACATTGGTGCGAAACTAGTGAGACAAGCTGCTGCCAAAACCAATGACCTGGCTGGGGATGGGACTACAACA
TCTGTCGTGCTAGCTCAGGGCCTAATTGCTGAAGGTGTTAAGGTGGTTGCAGCTGGTGCAAACCCTGTCCTAATCACCAGAGGAATTGAG
AAGACAGCAAAAGCATTAGTAGCTGAGTTGAAGAATATGTCAAAAGAGGTGGAAGACAGTGAACTAGCAGATGTGGCTGCAGTAAGTGCT
GGGAACAATTTGGAAGTAGGGAGTATGATTGCTGAAGCCATGAGCAAGGTTGGAAGGAAAGGTGTTGTGACACTAGAGGAGGGTAAAAGT
GCTGAAAACAGTCTGCGTGTGGTTGAAGGAATGCAATTTGACCGTGGTTACGTCTCTCCTTACTTTGTTACCGACAGTGAGAAAATGTCA
GTTGAATATGAGAACTGTAAGTTGCTACTGGTTGATAAAAAGATAACAAATGCAAGAGATCTTGTTAATGTCCTGGAAGATGCTATCAGA
AATGGTTACCCAATTTTAATTATTGCCGAAGATATTGAGCAAGAAGCTTTGGCGACTCTTGTTGTCAATAAGCTTAGAGGTGCCTTAAAG
GTCGCTGCACTTAAAGCTCCTGGTTTTGGTGAGCGAAAAAGCCAGTATCTTGATGACATAGCAACCCTTACTGGAGGCACTGTTATTAGG
GAGGAACTTGGCCTTACCTTGGACAAGGCTGACAAGGAAGTTCTAGGTCATGCTGCTAAAGTAGTGCTGACTAAGGATGCCACTACAATT
GTTGGTGATGGTAGCACTCAGGAAGCAGTCAACAAACGTGTTGCTCAGATTAAAAACCTGATAGAGGCTGCAGAACAAGATTATGAAAAG
GAAAAGCTAAATGAAAGAATTGCTAAGTTATCAGGAGGTGTGGCTGTCATACAGGTTGGAGCTCAAACTGAAACTGAATTGAAGGAGAAG
AAACTTAGAGTGGAAGATGCTCTCAATGCAACAAAGGCGGCTGTTGAGGAAGGTATTGTTGTTGGAGGAGGGTGCACGCTCCTCAGACTT
GCTGCAAAAGTTGATGCAATAAAGGGAACCCTTGCAAATGATGAGGAGAAGGTTGGAGCTGATATTGTCAAAAGAGCATTGAGCTACCCT
TTGAAATTAATTGCTAAAAATGCTGGCGTTAATGGAAGTGTTGTCAGTGAGAAGGTGCTGTCAAGTGATGATCCCAAATTTGGATATAAT
GCTGCAACTGGCAACTATGAAGACTTAATGGCTGCTGGCATCATTGATCCAACAAAGGTGGTGAGGTGTTGTCTAGAACACGCTGCATCT
GTGGCTAAGACATTCTTGATGTCAGATTGCGTGGTGGTTGAGATCAAGGAGCCCGAAGCAGCAGTTGCTGGCAACCCAATGGACAACTCA
GGATACGGTTACTAGGTGATTGAATGAAGGCTACTGATACCAGATAGATGAAGTTGAAAGCCTTTATTTTTTTGTAAAAGTTTAGGTATT
GTTTGTTGAAATGAATATATAATATCCTGGTGGGAGTAGCAGCCTTCAGGGTTCGGCACTGTTAATGAACATGCAATCCAATGTGTAATT
GCAGCTTCAGTGGATGTTGAGTCACGGGACATTAATAAATCTTTTATGTAATTTCTCATATTTCTAAGCTTTACTTGTTTCACCTTCATT
AGTTGTGGAATAGCATCAGGAAGAAAAAAAGAGAATGTTATGACATGACCTAATCTAATAATAACTGATATGTGAGAAAAAAAAAAAAAA
AAAAAAAAAAAC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
STU46136	chaperonin-60 beta subunit	chaperonin

Genomic locations (0)

None

Library representation (21)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	CSCH	Tubers	5038	5
Solanum tuberosum	CSWB	Tubers	6124	3
Solanum tuberosum	IVROOT	Root	5850	3
Solanum tuberosum	MXFL	Floral buds	6603	1
Solanum tuberosum	MXLF	Leaves	6585	1
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	4
Solanum tuberosum	STM	mixed tissues	14805	3
Solanum tuberosum	STOL	Stolon	6462	9
Solanum tuberosum	SWST	Stolon	5942	7
Solanum tuberosum	TBSK	Tuber Skin	4812	2
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	3
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	23
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	16
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	13
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	4
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	13
Solanum tuberosum	vSTmRNA		708	1

mRNA member sequences (119)

Alignment image suppressed for unigene with 119 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	86	Cpn60/TCP-1	147
2	22074	Chaprnin_Cpn60 Cpn60/TCP-1	77
5	56329	Chaprnin_Cpn60 Cpn60/TCP-1	76
1.1	101419	Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267)	214
2	118513	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	71
5	129005	Chaperonin Cpn60 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) GroEL-like chaperone ATPase - Molecular Function: ATP binding (GO:0005524) - Biological Process: protein folding (GO:0006457) - Molecular Function: unfolded protein binding (GO:0051082) Chaperonin Cpn60/TCP-1 - Molecular Function: protein binding (GO:0005515) - Molecular Function: ATP binding (GO:0005524) - Biological Process: cellular protein metabolism (GO:0044267) chaperonin GroEL	70

Preceding Unigenes (2)

Unigene	Build
SGN-U243346	Solanum tuberosum #3
SGN-U243347	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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